Functional Complexity Measure for Networks

We propose a complexity measure which addresses the functional flexibility of networks. It is conjectured that the functional flexibility is reflected in the topological diversity of the assigned graphs, resulting from a resolution of their vertices and a rewiring of their edges under certain constraints. The application will be a classification of networks in artificial or biological systems, where functionality plays a central role.Comment: 11 pages, LaTeX2e, 5 PostScript figure

Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure

Background: Most phylogeny analysis methods based on molecular sequences use multiple alignment where the quality of the alignment, which is dependent on the alignment parameters, determines the accuracy of the resulting trees. Different parameter combinations chosen for the multiple alignment may result in different phylogenies. A new non-alignment based approach, Relative Complexity Measure (RCM), has been introduced to tackle this problem and proven to work in fungi and mitochondrial DNA. Result: In this work, we present an application of the RCM method to reconstruct robust phylogenetic trees using sequence data for genus Galanthus obtained from different regions in Turkey. Phylogenies have been analyzed using nuclear and chloroplast DNA sequences. Results showed that, the tree obtained from nuclear ribosomal RNA gene sequences was more robust, while the tree obtained from the chloroplast DNA showed a higher degree of variation. Conclusions: Phylogenies generated by Relative Complexity Measure were found to be robust and results of RCM were more reliable than the compared techniques. Particularly, to overcome MSA-based problems, RCM seems to be a reasonable way and a good alternative to MSA-based phylogenetic analysis. We believe our method will become a mainstream phylogeny construction method especially for the highly variable sequence families where the accuracy of the MSA heavily depends on the alignment parameters

WEAK MEASUREMENT THEORY AND MODIFIED COGNITIVE COMPLEXITY MEASURE

Measurement is one of the problems in the area of software engineering. Since traditional measurement theory has a major problem in defining empirical observations on software entities in terms of their measured quantities, Morasca has tried to solve this problem by proposing Weak Measurement theory. In this paper, we tried to evaluate the applicability of weak measurement theory by applying it on a newly proposed Modified Cognitive Complexity Measure (MCCM). We also investigated the applicability of Weak Extensive Structure for deciding on the type of scale for MCCM. It is observed that the MCCM is on weak ratio scale

A Complexity Measure for Continuous Time Quantum Algorithms

We consider unitary dynamical evolutions on n qubits caused by time dependent pair-interaction Hamiltonians and show that the running time of a parallelized two-qubit gate network simulating the evolution is given by the time integral over the chromatic index of the interaction graph. This defines a complexity measure of continuous and discrete quantum algorithms which are in exact one-to-one correspondence. Furthermore we prove a lower bound on the growth of large-scale entanglement depending on the chromatic index.Comment: 6 pages, Revte

Offdiagonal Complexity: A computationally quick complexity measure for graphs and networks

A vast variety of biological, social, and economical networks shows topologies drastically differing from random graphs; yet the quantitative characterization remains unsatisfactory from a conceptual point of view. Motivated from the discussion of small scale-free networks, a biased link distribution entropy is defined, which takes an extremum for a power law distribution. This approach is extended to the node-node link cross-distribution, whose nondiagonal elements characterize the graph structure beyond link distribution, cluster coefficient and average path length. From here a simple (and computationally cheap) complexity measure can be defined. This Offdiagonal Complexity (OdC) is proposed as a novel measure to characterize the complexity of an undirected graph, or network. While both for regular lattices and fully connected networks OdC is zero, it takes a moderately low value for a random graph and shows high values for apparently complex structures as scale-free networks and hierarchical trees. The Offdiagonal Complexity apporach is applied to the Helicobacter pylori protein interaction network and randomly rewired surrogates.Comment: 12 pages, revised version, to appear in Physica