Parameterized Algorithms for Modular-Width

It is known that a number of natural graph problems which are FPT parameterized by treewidth become W-hard when parameterized by clique-width. It is therefore desirable to find a different structural graph parameter which is as general as possible, covers dense graphs but does not incur such a heavy algorithmic penalty. The main contribution of this paper is to consider a parameter called modular-width, defined using the well-known notion of modular decompositions. Using a combination of ILPs and dynamic programming we manage to design FPT algorithms for Coloring and Partitioning into paths (and hence Hamiltonian path and Hamiltonian cycle), which are W-hard for both clique-width and its recently introduced restriction, shrub-depth. We thus argue that modular-width occupies a sweet spot as a graph parameter, generalizing several simpler notions on dense graphs but still evading the "price of generality" paid by clique-width.Comment: to appear in IPEC 2013. arXiv admin note: text overlap with arXiv:1304.5479 by other author

Covering Pairs in Directed Acyclic Graphs

The Minimum Path Cover problem on directed acyclic graphs (DAGs) is a classical problem that provides a clear and simple mathematical formulation for several applications in different areas and that has an efficient algorithmic solution. In this paper, we study the computational complexity of two constrained variants of Minimum Path Cover motivated by the recent introduction of next-generation sequencing technologies in bioinformatics. The first problem (MinPCRP), given a DAG and a set of pairs of vertices, asks for a minimum cardinality set of paths "covering" all the vertices such that both vertices of each pair belong to the same path. For this problem, we show that, while it is NP-hard to compute if there exists a solution consisting of at most three paths, it is possible to decide in polynomial time whether a solution consisting of at most two paths exists. The second problem (MaxRPSP), given a DAG and a set of pairs of vertices, asks for a path containing the maximum number of the given pairs of vertices. We show its NP-hardness and also its W[1]-hardness when parametrized by the number of covered pairs. On the positive side, we give a fixed-parameter algorithm when the parameter is the maximum overlapping degree, a natural parameter in the bioinformatics applications of the problem

Clique versus Independent Set

Yannakakis' Clique versus Independent Set problem (CL-IS) in communication complexity asks for the minimum number of cuts separating cliques from stable sets in a graph, called CS-separator. Yannakakis provides a quasi-polynomial CS-separator, i.e. of size $O(n^{\log n})$, and addresses the problem of finding a polynomial CS-separator. This question is still open even for perfect graphs. We show that a polynomial CS-separator almost surely exists for random graphs. Besides, if H is a split graph (i.e. has a vertex-partition into a clique and a stable set) then there exists a constant $c_H$ for which we find a $O(n^{c_H})$ CS-separator on the class of H-free graphs. This generalizes a result of Yannakakis on comparability graphs. We also provide a $O(n^{c_k})$ CS-separator on the class of graphs without induced path of length k and its complement. Observe that on one side, $c_H$ is of order $O(|H| \log |H|)$ resulting from Vapnik-Chervonenkis dimension, and on the other side, $c_k$ is exponential. One of the main reason why Yannakakis' CL-IS problem is fascinating is that it admits equivalent formulations. Our main result in this respect is to show that a polynomial CS-separator is equivalent to the polynomial Alon-Saks-Seymour Conjecture, asserting that if a graph has an edge-partition into k complete bipartite graphs, then its chromatic number is polynomially bounded in terms of k. We also show that the classical approach to the stubborn problem (arising in CSP) which consists in covering the set of all solutions by $O(n^{\log n})$ instances of 2-SAT is again equivalent to the existence of a polynomial CS-separator

Graph Theory versus Minimum Rank for Index Coding

We obtain novel index coding schemes and show that they provably outperform all previously known graph theoretic bounds proposed so far. Further, we establish a rather strong negative result: all known graph theoretic bounds are within a logarithmic factor from the chromatic number. This is in striking contrast to minrank since prior work has shown that it can outperform the chromatic number by a polynomial factor in some cases. The conclusion is that all known graph theoretic bounds are not much stronger than the chromatic number.Comment: 8 pages, 2 figures. Submitted to ISIT 201