Real-time and Probabilistic Temporal Logics: An Overview

Over the last two decades, there has been an extensive study on logical formalisms for specifying and verifying real-time systems. Temporal logics have been an important research subject within this direction. Although numerous logics have been introduced for the formal specification of real-time and complex systems, an up to date comprehensive analysis of these logics does not exist in the literature. In this paper we analyse real-time and probabilistic temporal logics which have been widely used in this field. We extrapolate the notions of decidability, axiomatizability, expressiveness, model checking, etc. for each logic analysed. We also provide a comparison of features of the temporal logics discussed

The Inflation Technique for Causal Inference with Latent Variables

The problem of causal inference is to determine if a given probability distribution on observed variables is compatible with some causal structure. The difficult case is when the causal structure includes latent variables. We here introduce the $\textit{inflation technique}$ for tackling this problem. An inflation of a causal structure is a new causal structure that can contain multiple copies of each of the original variables, but where the ancestry of each copy mirrors that of the original. To every distribution of the observed variables that is compatible with the original causal structure, we assign a family of marginal distributions on certain subsets of the copies that are compatible with the inflated causal structure. It follows that compatibility constraints for the inflation can be translated into compatibility constraints for the original causal structure. Even if the constraints at the level of inflation are weak, such as observable statistical independences implied by disjoint causal ancestry, the translated constraints can be strong. We apply this method to derive new inequalities whose violation by a distribution witnesses that distribution's incompatibility with the causal structure (of which Bell inequalities and Pearl's instrumental inequality are prominent examples). We describe an algorithm for deriving all such inequalities for the original causal structure that follow from ancestral independences in the inflation. For three observed binary variables with pairwise common causes, it yields inequalities that are stronger in at least some aspects than those obtainable by existing methods. We also describe an algorithm that derives a weaker set of inequalities but is more efficient. Finally, we discuss which inflations are such that the inequalities one obtains from them remain valid even for quantum (and post-quantum) generalizations of the notion of a causal model.Comment: Minor final corrections, updated to match the published version as closely as possibl

Making Classical Ground State Spin Computing Fault-Tolerant

We examine a model of classical deterministic computing in which the ground state of the classical system is a spatial history of the computation. This model is relevant to quantum dot cellular automata as well as to recent universal adiabatic quantum computing constructions. In its most primitive form, systems constructed in this model cannot compute in an error free manner when working at non-zero temperature. However, by exploiting a mapping between the partition function for this model and probabilistic classical circuits we are able to show that it is possible to make this model effectively error free. We achieve this by using techniques in fault-tolerant classical computing and the result is that the system can compute effectively error free if the temperature is below a critical temperature. We further link this model to computational complexity and show that a certain problem concerning finite temperature classical spin systems is complete for the complexity class Merlin-Arthur. This provides an interesting connection between the physical behavior of certain many-body spin systems and computational complexity.Comment: 24 pages, 1 figur

Inference with Constrained Hidden Markov Models in PRISM

A Hidden Markov Model (HMM) is a common statistical model which is widely used for analysis of biological sequence data and other sequential phenomena. In the present paper we show how HMMs can be extended with side-constraints and present constraint solving techniques for efficient inference. Defining HMMs with side-constraints in Constraint Logic Programming have advantages in terms of more compact expression and pruning opportunities during inference. We present a PRISM-based framework for extending HMMs with side-constraints and show how well-known constraints such as cardinality and all different are integrated. We experimentally validate our approach on the biologically motivated problem of global pairwise alignment