Dynamic Compressive Sensing of Time-Varying Signals via Approximate Message Passing

In this work the dynamic compressive sensing (CS) problem of recovering sparse, correlated, time-varying signals from sub-Nyquist, non-adaptive, linear measurements is explored from a Bayesian perspective. While there has been a handful of previously proposed Bayesian dynamic CS algorithms in the literature, the ability to perform inference on high-dimensional problems in a computationally efficient manner remains elusive. In response, we propose a probabilistic dynamic CS signal model that captures both amplitude and support correlation structure, and describe an approximate message passing algorithm that performs soft signal estimation and support detection with a computational complexity that is linear in all problem dimensions. The algorithm, DCS-AMP, can perform either causal filtering or non-causal smoothing, and is capable of learning model parameters adaptively from the data through an expectation-maximization learning procedure. We provide numerical evidence that DCS-AMP performs within 3 dB of oracle bounds on synthetic data under a variety of operating conditions. We further describe the result of applying DCS-AMP to two real dynamic CS datasets, as well as a frequency estimation task, to bolster our claim that DCS-AMP is capable of offering state-of-the-art performance and speed on real-world high-dimensional problems.Comment: 32 pages, 7 figure

Compressive Imaging using Approximate Message Passing and a Markov-Tree Prior

We propose a novel algorithm for compressive imaging that exploits both the sparsity and persistence across scales found in the 2D wavelet transform coefficients of natural images. Like other recent works, we model wavelet structure using a hidden Markov tree (HMT) but, unlike other works, ours is based on loopy belief propagation (LBP). For LBP, we adopt a recently proposed "turbo" message passing schedule that alternates between exploitation of HMT structure and exploitation of compressive-measurement structure. For the latter, we leverage Donoho, Maleki, and Montanari's recently proposed approximate message passing (AMP) algorithm. Experiments with a large image database suggest that, relative to existing schemes, our turbo LBP approach yields state-of-the-art reconstruction performance with substantial reduction in complexity

Traction force microscopy with optimized regularization and automated Bayesian parameter selection for comparing cells

Adherent cells exert traction forces on to their environment, which allows them to migrate, to maintain tissue integrity, and to form complex multicellular structures. This traction can be measured in a perturbation-free manner with traction force microscopy (TFM). In TFM, traction is usually calculated via the solution of a linear system, which is complicated by undersampled input data, acquisition noise, and large condition numbers for some methods. Therefore, standard TFM algorithms either employ data filtering or regularization. However, these approaches require a manual selection of filter- or regularization parameters and consequently exhibit a substantial degree of subjectiveness. This shortcoming is particularly serious when cells in different conditions are to be compared because optimal noise suppression needs to be adapted for every situation, which invariably results in systematic errors. Here, we systematically test the performance of new methods from computer vision and Bayesian inference for solving the inverse problem in TFM. We compare two classical schemes, L1- and L2-regularization, with three previously untested schemes, namely Elastic Net regularization, Proximal Gradient Lasso, and Proximal Gradient Elastic Net. Overall, we find that Elastic Net regularization, which combines L1 and L2 regularization, outperforms all other methods with regard to accuracy of traction reconstruction. Next, we develop two methods, Bayesian L2 regularization and Advanced Bayesian L2 regularization, for automatic, optimal L2 regularization. Using artificial data and experimental data, we show that these methods enable robust reconstruction of traction without requiring a difficult selection of regularization parameters specifically for each data set. Thus, Bayesian methods can mitigate the considerable uncertainty inherent in comparing cellular traction forces

Robust and Efficient Inference of Scene and Object Motion in Multi-Camera Systems

Multi-camera systems have the ability to overcome some of the fundamental limitations of single camera based systems. Having multiple view points of a scene goes a long way in limiting the influence of field of view, occlusion, blur and poor resolution of an individual camera. This dissertation addresses robust and efficient inference of object motion and scene in multi-camera and multi-sensor systems. The first part of the dissertation discusses the role of constraints introduced by projective imaging towards robust inference of multi-camera/sensor based object motion. We discuss the role of the homography and epipolar constraints for fusing object motion perceived by individual cameras. For planar scenes, the homography constraints provide a natural mechanism for data association. For scenes that are not planar, the epipolar constraint provides a weaker multi-view relationship. We use the epipolar constraint for tracking in multi-camera and multi-sensor networks. In particular, we show that the epipolar constraint reduces the dimensionality of the state space of the problem by introducing a ``shared'' state space for the joint tracking problem. This allows for robust tracking even when one of the sensors fail due to poor SNR or occlusion. The second part of the dissertation deals with challenges in the computational aspects of tracking algorithms that are common to such systems. Much of the inference in the multi-camera and multi-sensor networks deal with complex non-linear models corrupted with non-Gaussian noise. Particle filters provide approximate Bayesian inference in such settings. We analyze the computational drawbacks of traditional particle filtering algorithms, and present a method for implementing the particle filter using the Independent Metropolis Hastings sampler, that is highly amenable to pipelined implementations and parallelization. We analyze the implementations of the proposed algorithm, and in particular concentrate on implementations that have minimum processing times. The last part of the dissertation deals with the efficient sensing paradigm of compressing sensing (CS) applied to signals in imaging, such as natural images and reflectance fields. We propose a hybrid signal model on the assumption that most real-world signals exhibit subspace compressibility as well as sparse representations. We show that several real-world visual signals such as images, reflectance fields, videos etc., are better approximated by this hybrid of two models. We derive optimal hybrid linear projections of the signal and show that theoretical guarantees and algorithms designed for CS can be easily extended to hybrid subspace-compressive sensing. Such methods reduce the amount of information sensed by a camera, and help in reducing the so called data deluge problem in large multi-camera systems