Balanced crossover operators in Genetic Algorithms

In several combinatorial optimization problems arising in cryptography and design theory, the admissible solutions must often satisfy a balancedness constraint, such as being represented by bitstrings with a fixed number of ones. For this reason, several works in the literature tackling these optimization problems with Genetic Algorithms (GA) introduced new balanced crossover operators which ensure that the offspring has the same balancedness characteristics of the parents. However, the use of such operators has never been thoroughly motivated, except for some generic considerations about search space reduction. In this paper, we undertake a rigorous statistical investigation on the effect of balanced and unbalanced crossover operators against three optimization problems from the area of cryptography and coding theory: nonlinear balanced Boolean functions, binary Orthogonal Arrays (OA) and bent functions. In particular, we consider three different balanced crossover operators (each with two variants: \u201cleft-to-right\u201d and \u201cshuffled\u201d), two of which have never been published before, and compare their performances with classic one-point crossover. We are able to confirm that the balanced crossover operators perform better than one-point crossover. Furthermore, in two out of three crossovers, the \u201cleft-to-right\u201d version performs better than the \u201cshuffled\u201d version

Exploring Task Mappings on Heterogeneous MPSoCs using a Bias-Elitist Genetic Algorithm

Exploration of task mappings plays a crucial role in achieving high performance in heterogeneous multi-processor system-on-chip (MPSoC) platforms. The problem of optimally mapping a set of tasks onto a set of given heterogeneous processors for maximal throughput has been known, in general, to be NP-complete. The problem is further exacerbated when multiple applications (i.e., bigger task sets) and the communication between tasks are also considered. Previous research has shown that Genetic Algorithms (GA) typically are a good choice to solve this problem when the solution space is relatively small. However, when the size of the problem space increases, classic genetic algorithms still suffer from the problem of long evolution times. To address this problem, this paper proposes a novel bias-elitist genetic algorithm that is guided by domain-specific heuristics to speed up the evolution process. Experimental results reveal that our proposed algorithm is able to handle large scale task mapping problems and produces high-quality mapping solutions in only a short time period.Comment: 9 pages, 11 figures, uses algorithm2e.st

Automating biomedical data science through tree-based pipeline optimization

Over the past decade, data science and machine learning has grown from a mysterious art form to a staple tool across a variety of fields in academia, business, and government. In this paper, we introduce the concept of tree-based pipeline optimization for automating one of the most tedious parts of machine learning---pipeline design. We implement a Tree-based Pipeline Optimization Tool (TPOT) and demonstrate its effectiveness on a series of simulated and real-world genetic data sets. In particular, we show that TPOT can build machine learning pipelines that achieve competitive classification accuracy and discover novel pipeline operators---such as synthetic feature constructors---that significantly improve classification accuracy on these data sets. We also highlight the current challenges to pipeline optimization, such as the tendency to produce pipelines that overfit the data, and suggest future research paths to overcome these challenges. As such, this work represents an early step toward fully automating machine learning pipeline design.Comment: 16 pages, 5 figures, to appear in EvoBIO 2016 proceeding

Evolving cellular automata to generate nonlinear sequences with desirable properties

This paper presents a new chromosomal representation and associated genetic operators for the evolution of highly nonlinear cellular automata that generate pseudorandom number sequences with desirable properties ensured. This chromosomal representation reduces the computational complexity of genetic operators to evolve valid solutions while facilitating fitness evaluation based on the DIEHARD statistical tests

Memetic Multilevel Hypergraph Partitioning

Hypergraph partitioning has a wide range of important applications such as VLSI design or scientific computing. With focus on solution quality, we develop the first multilevel memetic algorithm to tackle the problem. Key components of our contribution are new effective multilevel recombination and mutation operations that provide a large amount of diversity. We perform a wide range of experiments on a benchmark set containing instances from application areas such VLSI, SAT solving, social networks, and scientific computing. Compared to the state-of-the-art hypergraph partitioning tools hMetis, PaToH, and KaHyPar, our new algorithm computes the best result on almost all instances

Sparse experimental design : an effective an efficient way discovering better genetic algorithm structures

The focus of this paper is the demonstration that sparse experimental design is a useful strategy for developing Genetic Algorithms. It is increasingly apparent from a number of reports and papers within a variety of different problem domains that the 'best' structure for a GA may be dependent upon the application. The GA structure is defined as both the types of operators and the parameters settings used during operation. The differences observed may be linked to the nature of the problem, the type of fitness function, or the depth or breadth of the problem under investigation. This paper demonstrates that advanced experimental design may be adopted to increase the understanding of the relationships between the GA structure and the problem domain, facilitating the selection of improved structures with a minimum of effort