An approximability-related parameter on graphs―-properties and applications

Graph TheoryInternational audienceWe introduce a binary parameter on optimisation problems called separation. The parameter is used to relate the approximation ratios of different optimisation problems; in other words, we can convert approximability (and non-approximability) result for one problem into (non)-approximability results for other problems. Our main application is the problem (weighted) maximum H-colourable subgraph (Max H-Col), which is a restriction of the general maximum constraint satisfaction problem (Max CSP) to a single, binary, and symmetric relation. Using known approximation ratios for Max k-cut, we obtain general asymptotic approximability results for Max H-Col for an arbitrary graph H. For several classes of graphs, we provide near-optimal results under the unique games conjecture. We also investigate separation as a graph parameter. In this vein, we study its properties on circular complete graphs. Furthermore, we establish a close connection to work by Šámal on cubical colourings of graphs. This connection shows that our parameter is closely related to a special type of chromatic number. We believe that this insight may turn out to be crucial for understanding the behaviour of the parameter, and in the longer term, for understanding the approximability of optimisation problems such as Max H-Col

On the Complexity of the Single Individual SNP Haplotyping Problem

We present several new results pertaining to haplotyping. These results concern the combinatorial problem of reconstructing haplotypes from incomplete and/or imperfectly sequenced haplotype fragments. We consider the complexity of the problems Minimum Error Correction (MEC) and Longest Haplotype Reconstruction (LHR) for different restrictions on the input data. Specifically, we look at the gapless case, where every row of the input corresponds to a gapless haplotype-fragment, and the 1-gap case, where at most one gap per fragment is allowed. We prove that MEC is APX-hard in the 1-gap case and still NP-hard in the gapless case. In addition, we question earlier claims that MEC is NP-hard even when the input matrix is restricted to being completely binary. Concerning LHR, we show that this problem is NP-hard and APX-hard in the 1-gap case (and thus also in the general case), but is polynomial time solvable in the gapless case.Comment: 26 pages. Related to the WABI2005 paper, "On the Complexity of Several Haplotyping Problems", but with more/different results. This papers has just been submitted to the IEEE/ACM Transactions on Computational Biology and Bioinformatics and we are awaiting a decision on acceptance. It differs from the mid-August version of this paper because here we prove that 1-gap LHR is APX-hard. (In the earlier version of the paper we could prove only that it was NP-hard.

Maximum weight cycle packing in directed graphs, with application to kidney exchange programs

Centralized matching programs have been established in several countries to organize kidney exchanges between incompatible patient-donor pairs. At the heart of these programs are algorithms to solve kidney exchange problems, which can be modelled as cycle packing problems in a directed graph, involving cycles of length 2, 3, or even longer. Usually, the goal is to maximize the number of transplants, but sometimes the total benefit is maximized by considering the differences between suitable kidneys. These problems correspond to computing cycle packings of maximum size or maximum weight in directed graphs. Here we prove the APX-completeness of the problem of finding a maximum size exchange involving only 2-cycles and 3-cycles. We also present an approximation algorithm and an exact algorithm for the problem of finding a maximum weight exchange involving cycles of bounded length. The exact algorithm has been used to provide optimal solutions to real kidney exchange problems arising from the National Matching Scheme for Paired Donation run by NHS Blood and Transplant, and we describe practical experience based on this collaboration

The power of linear programming for general-valued CSPs

Let $D$, called the domain, be a fixed finite set and let $\Gamma$, called the valued constraint language, be a fixed set of functions of the form $f:D^m\to\mathbb{Q}\cup\{\infty\}$, where different functions might have different arity $m$. We study the valued constraint satisfaction problem parametrised by $\Gamma$, denoted by VCSP$(\Gamma)$. These are minimisation problems given by $n$ variables and the objective function given by a sum of functions from $\Gamma$, each depending on a subset of the $n$ variables. Finite-valued constraint languages contain functions that take on only rational values and not infinite values. Our main result is a precise algebraic characterisation of valued constraint languages whose instances can be solved exactly by the basic linear programming relaxation (BLP). For a valued constraint language $\Gamma$, BLP is a decision procedure for $\Gamma$ if and only if $\Gamma$ admits a symmetric fractional polymorphism of every arity. For a finite-valued constraint language $\Gamma$, BLP is a decision procedure if and only if $\Gamma$ admits a symmetric fractional polymorphism of some arity, or equivalently, if $\Gamma$ admits a symmetric fractional polymorphism of arity 2. Using these results, we obtain tractability of several novel classes of problems, including problems over valued constraint languages that are: (1) submodular on arbitrary lattices; (2) $k$-submodular on arbitrary finite domains; (3) weakly (and hence strongly) tree-submodular on arbitrary trees.Comment: A full version of a FOCS'12 paper by the last two authors (arXiv:1204.1079) and an ICALP'13 paper by the first author (arXiv:1207.7213) to appear in SIAM Journal on Computing (SICOMP

From the Quantum Approximate Optimization Algorithm to a Quantum Alternating Operator Ansatz

The next few years will be exciting as prototype universal quantum processors emerge, enabling implementation of a wider variety of algorithms. Of particular interest are quantum heuristics, which require experimentation on quantum hardware for their evaluation, and which have the potential to significantly expand the breadth of quantum computing applications. A leading candidate is Farhi et al.'s Quantum Approximate Optimization Algorithm, which alternates between applying a cost-function-based Hamiltonian and a mixing Hamiltonian. Here, we extend this framework to allow alternation between more general families of operators. The essence of this extension, the Quantum Alternating Operator Ansatz, is the consideration of general parametrized families of unitaries rather than only those corresponding to the time-evolution under a fixed local Hamiltonian for a time specified by the parameter. This ansatz supports the representation of a larger, and potentially more useful, set of states than the original formulation, with potential long-term impact on a broad array of application areas. For cases that call for mixing only within a desired subspace, refocusing on unitaries rather than Hamiltonians enables more efficiently implementable mixers than was possible in the original framework. Such mixers are particularly useful for optimization problems with hard constraints that must always be satisfied, defining a feasible subspace, and soft constraints whose violation we wish to minimize. More efficient implementation enables earlier experimental exploration of an alternating operator approach to a wide variety of approximate optimization, exact optimization, and sampling problems. Here, we introduce the Quantum Alternating Operator Ansatz, lay out design criteria for mixing operators, detail mappings for eight problems, and provide brief descriptions of mappings for diverse problems.Comment: 51 pages, 2 figures. Revised to match journal pape

Approximate Approximation on a Quantum Annealer

Many problems of industrial interest are NP-complete, and quickly exhaust resources of computational devices with increasing input sizes. Quantum annealers (QA) are physical devices that aim at this class of problems by exploiting quantum mechanical properties of nature. However, they compete with efficient heuristics and probabilistic or randomised algorithms on classical machines that allow for finding approximate solutions to large NP-complete problems. While first implementations of QA have become commercially available, their practical benefits are far from fully explored. To the best of our knowledge, approximation techniques have not yet received substantial attention. In this paper, we explore how problems' approximate versions of varying degree can be systematically constructed for quantum annealer programs, and how this influences result quality or the handling of larger problem instances on given set of qubits. We illustrate various approximation techniques on both, simulations and real QA hardware, on different seminal problems, and interpret the results to contribute towards a better understanding of the real-world power and limitations of current-state and future quantum computing.Comment: Proceedings of the 17th ACM International Conference on Computing Frontiers (CF 2020

Non-Local Probes Do Not Help with Graph Problems

This work bridges the gap between distributed and centralised models of computing in the context of sublinear-time graph algorithms. A priori, typical centralised models of computing (e.g., parallel decision trees or centralised local algorithms) seem to be much more powerful than distributed message-passing algorithms: centralised algorithms can directly probe any part of the input, while in distributed algorithms nodes can only communicate with their immediate neighbours. We show that for a large class of graph problems, this extra freedom does not help centralised algorithms at all: for example, efficient stateless deterministic centralised local algorithms can be simulated with efficient distributed message-passing algorithms. In particular, this enables us to transfer existing lower bound results from distributed algorithms to centralised local algorithms