Geometric lattice structure of covering and its application to attribute reduction through matroids

The reduction of covering decision systems is an important problem in data mining, and covering-based rough sets serve as an efficient technique to process the problem. Geometric lattices have been widely used in many fields, especially greedy algorithm design which plays an important role in the reduction problems. Therefore, it is meaningful to combine coverings with geometric lattices to solve the optimization problems. In this paper, we obtain geometric lattices from coverings through matroids and then apply them to the issue of attribute reduction. First, a geometric lattice structure of a covering is constructed through transversal matroids. Then its atoms are studied and used to describe the lattice. Second, considering that all the closed sets of a finite matroid form a geometric lattice, we propose a dependence space through matroids and study the attribute reduction issues of the space, which realizes the application of geometric lattices to attribute reduction. Furthermore, a special type of information system is taken as an example to illustrate the application. In a word, this work points out an interesting view, namely, geometric lattice to study the attribute reduction issues of information systems

Visualizing and Interacting with Concept Hierarchies

Concept Hierarchies and Formal Concept Analysis are theoretically well grounded and largely experimented methods. They rely on line diagrams called Galois lattices for visualizing and analysing object-attribute sets. Galois lattices are visually seducing and conceptually rich for experts. However they present important drawbacks due to their concept oriented overall structure: analysing what they show is difficult for non experts, navigation is cumbersome, interaction is poor, and scalability is a deep bottleneck for visual interpretation even for experts. In this paper we introduce semantic probes as a means to overcome many of these problems and extend usability and application possibilities of traditional FCA visualization methods. Semantic probes are visual user centred objects which extract and organize reduced Galois sub-hierarchies. They are simpler, clearer, and they provide a better navigation support through a rich set of interaction possibilities. Since probe driven sub-hierarchies are limited to users focus, scalability is under control and interpretation is facilitated. After some successful experiments, several applications are being developed with the remaining problem of finding a compromise between simplicity and conceptual expressivity

A conceptual approach to gene expression analysis enhanced by visual analytics

The analysis of gene expression data is a complex task for biologists wishing to understand the role of genes in the formation of diseases such as cancer. Biologists need greater support when trying to discover, and comprehend, new relationships within their data. In this paper, we describe an approach to the analysis of gene expression data where overlapping groupings are generated by Formal Concept Analysis and interactively analyzed in a tool called CUBIST. The CUBIST workflow involves querying a semantic database and converting the result into a formal context, which can be simplified to make it manageable, before it is visualized as a concept lattice and associated charts