574 research outputs found
A Survey on Deep Learning in Medical Image Analysis
Deep learning algorithms, in particular convolutional networks, have rapidly
become a methodology of choice for analyzing medical images. This paper reviews
the major deep learning concepts pertinent to medical image analysis and
summarizes over 300 contributions to the field, most of which appeared in the
last year. We survey the use of deep learning for image classification, object
detection, segmentation, registration, and other tasks and provide concise
overviews of studies per application area. Open challenges and directions for
future research are discussed.Comment: Revised survey includes expanded discussion section and reworked
introductory section on common deep architectures. Added missed papers from
before Feb 1st 201
Learning to detect chest radiographs containing lung nodules using visual attention networks
Machine learning approaches hold great potential for the automated detection
of lung nodules in chest radiographs, but training the algorithms requires vary
large amounts of manually annotated images, which are difficult to obtain. Weak
labels indicating whether a radiograph is likely to contain pulmonary nodules
are typically easier to obtain at scale by parsing historical free-text
radiological reports associated to the radiographs. Using a repositotory of
over 700,000 chest radiographs, in this study we demonstrate that promising
nodule detection performance can be achieved using weak labels through
convolutional neural networks for radiograph classification. We propose two
network architectures for the classification of images likely to contain
pulmonary nodules using both weak labels and manually-delineated bounding
boxes, when these are available. Annotated nodules are used at training time to
deliver a visual attention mechanism informing the model about its localisation
performance. The first architecture extracts saliency maps from high-level
convolutional layers and compares the estimated position of a nodule against
the ground truth, when this is available. A corresponding localisation error is
then back-propagated along with the softmax classification error. The second
approach consists of a recurrent attention model that learns to observe a short
sequence of smaller image portions through reinforcement learning. When a
nodule annotation is available at training time, the reward function is
modified accordingly so that exploring portions of the radiographs away from a
nodule incurs a larger penalty. Our empirical results demonstrate the potential
advantages of these architectures in comparison to competing methodologies
SonoNet: Real-Time Detection and Localisation of Fetal Standard Scan Planes in Freehand Ultrasound
Identifying and interpreting fetal standard scan planes during 2D ultrasound
mid-pregnancy examinations are highly complex tasks which require years of
training. Apart from guiding the probe to the correct location, it can be
equally difficult for a non-expert to identify relevant structures within the
image. Automatic image processing can provide tools to help experienced as well
as inexperienced operators with these tasks. In this paper, we propose a novel
method based on convolutional neural networks which can automatically detect 13
fetal standard views in freehand 2D ultrasound data as well as provide a
localisation of the fetal structures via a bounding box. An important
contribution is that the network learns to localise the target anatomy using
weak supervision based on image-level labels only. The network architecture is
designed to operate in real-time while providing optimal output for the
localisation task. We present results for real-time annotation, retrospective
frame retrieval from saved videos, and localisation on a very large and
challenging dataset consisting of images and video recordings of full clinical
anomaly screenings. We found that the proposed method achieved an average
F1-score of 0.798 in a realistic classification experiment modelling real-time
detection, and obtained a 90.09% accuracy for retrospective frame retrieval.
Moreover, an accuracy of 77.8% was achieved on the localisation task.Comment: 12 pages, 8 figures, published in IEEE Transactions in Medical
Imagin
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