An ILP Solver for Multi-label MRFs with Connectivity Constraints

Integer Linear Programming (ILP) formulations of Markov random fields (MRFs) models with global connectivity priors were investigated previously in computer vision, e.g., \cite{globalinter,globalconn}. In these works, only Linear Programing (LP) relaxations \cite{globalinter,globalconn} or simplified versions \cite{graphcutbase} of the problem were solved. This paper investigates the ILP of multi-label MRF with exact connectivity priors via a branch-and-cut method, which provably finds globally optimal solutions. The method enforces connectivity priors iteratively by a cutting plane method, and provides feasible solutions with a guarantee on sub-optimality even if we terminate it earlier. The proposed ILP can be applied as a post-processing method on top of any existing multi-label segmentation approach. As it provides globally optimal solution, it can be used off-line to generate ground-truth labeling, which serves as quality check for any fast on-line algorithm. Furthermore, it can be used to generate ground-truth proposals for weakly supervised segmentation. We demonstrate the power and usefulness of our model by several experiments on the BSDS500 and PASCAL image dataset, as well as on medical images with trained probability maps.Comment: 19 page

Dynamic and Multi-functional Labeling Schemes

We investigate labeling schemes supporting adjacency, ancestry, sibling, and connectivity queries in forests. In the course of more than 20 years, the existence of $\log n + O(\log \log)$ labeling schemes supporting each of these functions was proven, with the most recent being ancestry [Fraigniaud and Korman, STOC '10]. Several multi-functional labeling schemes also enjoy lower or upper bounds of $\log n + \Omega(\log \log n)$ or $\log n + O(\log \log n)$ respectively. Notably an upper bound of $\log n + 5\log \log n$ for adjacency+siblings and a lower bound of $\log n + \log \log n$ for each of the functions siblings, ancestry, and connectivity [Alstrup et al., SODA '03]. We improve the constants hidden in the $O$-notation. In particular we show a $\log n + 2\log \log n$ lower bound for connectivity+ancestry and connectivity+siblings, as well as an upper bound of $\log n + 3\log \log n + O(\log \log \log n)$ for connectivity+adjacency+siblings by altering existing methods. In the context of dynamic labeling schemes it is known that ancestry requires $\Omega(n)$ bits [Cohen, et al. PODS '02]. In contrast, we show upper and lower bounds on the label size for adjacency, siblings, and connectivity of $2\log n$ bits, and $3 \log n$ to support all three functions. There exist efficient adjacency labeling schemes for planar, bounded treewidth, bounded arboricity and interval graphs. In a dynamic setting, we show a lower bound of $\Omega(n)$ for each of those families.Comment: 17 pages, 5 figure

A simple and optimal ancestry labeling scheme for trees

We present a $\lg n + 2 \lg \lg n+3$ ancestry labeling scheme for trees. The problem was first presented by Kannan et al. [STOC 88'] along with a simple $2 \lg n$ solution. Motivated by applications to XML files, the label size was improved incrementally over the course of more than 20 years by a series of papers. The last, due to Fraigniaud and Korman [STOC 10'], presented an asymptotically optimal $\lg n + 4 \lg \lg n+O(1)$ labeling scheme using non-trivial tree-decomposition techniques. By providing a framework generalizing interval based labeling schemes, we obtain a simple, yet asymptotically optimal solution to the problem. Furthermore, our labeling scheme is attained by a small modification of the original $2 \lg n$ solution.Comment: 12 pages, 1 figure. To appear at ICALP'1

Elastic Registration of Geodesic Vascular Graphs

Vascular graphs can embed a number of high-level features, from morphological parameters, to functional biomarkers, and represent an invaluable tool for longitudinal and cross-sectional clinical inference. This, however, is only feasible when graphs are co-registered together, allowing coherent multiple comparisons. The robust registration of vascular topologies stands therefore as key enabling technology for group-wise analyses. In this work, we present an end-to-end vascular graph registration approach, that aligns networks with non-linear geometries and topological deformations, by introducing a novel overconnected geodesic vascular graph formulation, and without enforcing any anatomical prior constraint. The 3D elastic graph registration is then performed with state-of-the-art graph matching methods used in computer vision. Promising results of vascular matching are found using graphs from synthetic and real angiographies. Observations and future designs are discussed towards potential clinical applications