Expanded delta networks for very large parallel computers

In this paper we analyze a generalization of the traditional delta network, introduced by Patel [21], and dubbed Expanded Delta Network (EDN). These networks provide in general multiple paths that can be exploited to reduce contention in the network resulting in increased performance. The crossbar and traditional delta networks are limiting cases of this class of networks. However, the delta network does not provide the multiple paths that the more general expanded delta networks provide, and crossbars are to costly to use for large networks. The EDNs are analyzed with respect to their routing capabilities in the MIMD and SIMD models of computation.The concepts of capacity and clustering are also addressed. In massively parallel SIMD computers, it is the trend to put a larger number processors on a chip, but due to I/O constraints only a subset of the total number of processors may have access to the network. This is introduced as a Restricted Access Expanded Delta Network of which the MasPar MP-1 router network is an example

Programming Quantum Computers Using Design Automation

Recent developments in quantum hardware indicate that systems featuring more than 50 physical qubits are within reach. At this scale, classical simulation will no longer be feasible and there is a possibility that such quantum devices may outperform even classical supercomputers at certain tasks. With the rapid growth of qubit numbers and coherence times comes the increasingly difficult challenge of quantum program compilation. This entails the translation of a high-level description of a quantum algorithm to hardware-specific low-level operations which can be carried out by the quantum device. Some parts of the calculation may still be performed manually due to the lack of efficient methods. This, in turn, may lead to a design gap, which will prevent the programming of a quantum computer. In this paper, we discuss the challenges in fully-automatic quantum compilation. We motivate directions for future research to tackle these challenges. Yet, with the algorithms and approaches that exist today, we demonstrate how to automatically perform the quantum programming flow from algorithm to a physical quantum computer for a simple algorithmic benchmark, namely the hidden shift problem. We present and use two tool flows which invoke RevKit. One which is based on ProjectQ and which targets the IBM Quantum Experience or a local simulator, and one which is based on Microsoft's quantum programming language Q$\#$.Comment: 10 pages, 10 figures. To appear in: Proceedings of Design, Automation and Test in Europe (DATE 2018

Second-generation PLINK: rising to the challenge of larger and richer datasets

PLINK 1 is a widely used open-source C/C++ toolset for genome-wide association studies (GWAS) and research in population genetics. However, the steady accumulation of data from imputation and whole-genome sequencing studies has exposed a strong need for even faster and more scalable implementations of key functions. In addition, GWAS and population-genetic data now frequently contain probabilistic calls, phase information, and/or multiallelic variants, none of which can be represented by PLINK 1's primary data format. To address these issues, we are developing a second-generation codebase for PLINK. The first major release from this codebase, PLINK 1.9, introduces extensive use of bit-level parallelism, O(sqrt(n))-time/constant-space Hardy-Weinberg equilibrium and Fisher's exact tests, and many other algorithmic improvements. In combination, these changes accelerate most operations by 1-4 orders of magnitude, and allow the program to handle datasets too large to fit in RAM. This will be followed by PLINK 2.0, which will introduce (a) a new data format capable of efficiently representing probabilities, phase, and multiallelic variants, and (b) extensions of many functions to account for the new types of information. The second-generation versions of PLINK will offer dramatic improvements in performance and compatibility. For the first time, users without access to high-end computing resources can perform several essential analyses of the feature-rich and very large genetic datasets coming into use.Comment: 2 figures, 1 additional fil