33,161 research outputs found
Bayesian data assimilation in shape registration
In this paper we apply a Bayesian framework to the problem of geodesic curve matching. Given a template curve, the geodesic equations provide a mapping from initial conditions\ud
for the conjugate momentum onto topologically equivalent shapes. Here, we aim to recover the well defined posterior distribution on the initial momentum which gives rise to observed points on the target curve; this is achieved by explicitly including a reparameterisation in the formulation. Appropriate priors are chosen for the functions which together determine this field and the positions of the observation points, the initial momentum p0 and the reparameterisation vector field v, informed by regularity results about the forward model. Having done this, we illustrate how Maximum Likelihood Estimators (MLEs) can be used to find regions of high posterior density, but also how we can apply recently developed MCMC methods on function spaces to characterise the whole of the posterior density. These illustrative examples also include scenarios where the posterior distribution is multimodal and irregular, leading us to the conclusion that knowledge of a state of global maximal posterior density does not always give us the whole picture, and full posterior sampling can give better quantification of likely states and the overall uncertainty inherent in the problem
Constructing a WISE High Resolution Galaxy Atlas
After eight months of continuous observations, the Wide-field Infrared Survey
Explorer (WISE) mapped the entire sky at 3.4 {\mu}m, 4.6 {\mu}m, 12 {\mu}m and
22 {\mu}m. We have begun a dedicated WISE High Resolution Galaxy Atlas (WHRGA)
project to fully characterize large, nearby galaxies and produce a legacy image
atlas and source catalogue. Here we summarize the deconvolution technique used
to significantly improve the spatial resolution of WISE imaging, specifically
designed to study the internal anatomy of nearby galaxies. As a case study, we
present results for the galaxy NGC 1566, comparing the WISE super-resolution
image processing to that of Spitzer, GALEX and ground-based imaging. The is the
first paper in a two part series; results for a much larger sample of nearby
galaxies is presented in the second paper.Comment: Published in the AJ (2012, AJ, 144, 68
Anatomically Constrained Video-CT Registration via the V-IMLOP Algorithm
Functional endoscopic sinus surgery (FESS) is a surgical procedure used to
treat acute cases of sinusitis and other sinus diseases. FESS is fast becoming
the preferred choice of treatment due to its minimally invasive nature.
However, due to the limited field of view of the endoscope, surgeons rely on
navigation systems to guide them within the nasal cavity. State of the art
navigation systems report registration accuracy of over 1mm, which is large
compared to the size of the nasal airways. We present an anatomically
constrained video-CT registration algorithm that incorporates multiple video
features. Our algorithm is robust in the presence of outliers. We also test our
algorithm on simulated and in-vivo data, and test its accuracy against
degrading initializations.Comment: 8 pages, 4 figures, MICCA
Anatomical Priors in Convolutional Networks for Unsupervised Biomedical Segmentation
We consider the problem of segmenting a biomedical image into anatomical
regions of interest. We specifically address the frequent scenario where we
have no paired training data that contains images and their manual
segmentations. Instead, we employ unpaired segmentation images to build an
anatomical prior. Critically these segmentations can be derived from imaging
data from a different dataset and imaging modality than the current task. We
introduce a generative probabilistic model that employs the learned prior
through a convolutional neural network to compute segmentations in an
unsupervised setting. We conducted an empirical analysis of the proposed
approach in the context of structural brain MRI segmentation, using a
multi-study dataset of more than 14,000 scans. Our results show that an
anatomical prior can enable fast unsupervised segmentation which is typically
not possible using standard convolutional networks. The integration of
anatomical priors can facilitate CNN-based anatomical segmentation in a range
of novel clinical problems, where few or no annotations are available and thus
standard networks are not trainable. The code is freely available at
http://github.com/adalca/neuron.Comment: Presented at CVPR 2018. IEEE CVPR proceedings pp. 9290-929
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