6,043 research outputs found
Ontology of core data mining entities
In this article, we present OntoDM-core, an ontology of core data mining
entities. OntoDM-core defines themost essential datamining entities in a three-layered
ontological structure comprising of a specification, an implementation and an application
layer. It provides a representational framework for the description of mining
structured data, and in addition provides taxonomies of datasets, data mining tasks,
generalizations, data mining algorithms and constraints, based on the type of data.
OntoDM-core is designed to support a wide range of applications/use cases, such as
semantic annotation of data mining algorithms, datasets and results; annotation of
QSAR studies in the context of drug discovery investigations; and disambiguation of
terms in text mining. The ontology has been thoroughly assessed following the practices
in ontology engineering, is fully interoperable with many domain resources and
is easy to extend
Infectious Disease Ontology
Technological developments have resulted in tremendous increases in the volume and diversity of the data and information that must be processed in the course of biomedical and clinical research and practice. Researchers are at the same time under ever greater pressure to share data and to take steps to ensure that data resources are interoperable. The use of ontologies to annotate data has proven successful in supporting these goals and in providing new possibilities for the automated processing of data and information. In this chapter, we describe different types of vocabulary resources and emphasize those features of formal ontologies that make them most useful for computational applications. We describe current uses of ontologies and discuss future goals for ontology-based computing, focusing on its use in the field of infectious diseases. We review the largest and most widely used vocabulary resources relevant to the study of infectious diseases and conclude with a description of the Infectious Disease Ontology (IDO) suite of interoperable ontology modules that together cover the entire infectious disease domain
Pragmatic Ontology Evolution: Reconciling User Requirements and Application Performance
Increasingly, organizations are adopting ontologies to describe their large catalogues of items. These ontologies need to evolve regularly in response to changes in the domain and the emergence of new requirements. An important step of this process is the selection of candidate concepts to include in the new version of the ontology. This operation needs to take into account a variety of factors and in particular reconcile user requirements and application performance. Current ontology evolution methods focus either on ranking concepts according to their relevance or on preserving compatibility with existing applications. However, they do not take in consideration the impact of the ontology evolution process on the performance of computational tasks – e.g., in this work we focus on instance tagging, similarity computation, generation of recommendations, and data clustering. In this paper, we propose the Pragmatic Ontology Evolution (POE) framework, a novel approach for selecting from a group of candidates a set of concepts able to produce a new version of a given ontology that i) is consistent with the a set of user requirements (e.g., max number of concepts in the ontology), ii) is parametrised with respect to a number of dimensions (e.g., topological considerations), and iii) effectively supports relevant computational tasks. Our approach also supports users in navigating the space of possible solutions by showing how certain choices, such as limiting the number of concepts or privileging trendy concepts rather than historical ones, would reflect on the application performance. An evaluation of POE on the real-world scenario of the evolving Springer Nature taxonomy for editorial classification yielded excellent results, demonstrating a significant improvement over alternative approaches
Lightweight Ontologies
Ontologies are explicit specifications of conceptualizations. They are often thought of as directed graphs whose nodes represent concepts and whose edges represent relations between concepts. The notion of concept is understood as defined in Knowledge Representation, i.e., as a set of objects or individuals. This set is called the concept extension or the concept interpretation. Concepts are often lexically defined, i.e., they have natural language names which are used to describe the concept extensions (e.g., concept mother denotes the set of all female parents). Therefore, when ontologies are visualized, their nodes are often shown with corresponding natural language concept names. The backbone structure of the ontology graph is a taxonomy in which the relations are “is-a”, whereas the remaining structure of the graph supplies auxiliary information about the modeled domain and may include relations like “part-of”, “located-in”, “is-parent-of”, and many others
Multi modal multi-semantic image retrieval
PhDThe rapid growth in the volume of visual information, e.g. image, and video can
overwhelm users’ ability to find and access the specific visual information of interest
to them. In recent years, ontology knowledge-based (KB) image information retrieval
techniques have been adopted into in order to attempt to extract knowledge from these
images, enhancing the retrieval performance. A KB framework is presented to
promote semi-automatic annotation and semantic image retrieval using multimodal
cues (visual features and text captions). In addition, a hierarchical structure for the KB
allows metadata to be shared that supports multi-semantics (polysemy) for concepts.
The framework builds up an effective knowledge base pertaining to a domain specific
image collection, e.g. sports, and is able to disambiguate and assign high level
semantics to ‘unannotated’ images.
Local feature analysis of visual content, namely using Scale Invariant Feature
Transform (SIFT) descriptors, have been deployed in the ‘Bag of Visual Words’
model (BVW) as an effective method to represent visual content information and to
enhance its classification and retrieval. Local features are more useful than global
features, e.g. colour, shape or texture, as they are invariant to image scale, orientation
and camera angle. An innovative approach is proposed for the representation,
annotation and retrieval of visual content using a hybrid technique based upon the use
of an unstructured visual word and upon a (structured) hierarchical ontology KB
model. The structural model facilitates the disambiguation of unstructured visual
words and a more effective classification of visual content, compared to a vector
space model, through exploiting local conceptual structures and their relationships.
The key contributions of this framework in using local features for image
representation include: first, a method to generate visual words using the semantic
local adaptive clustering (SLAC) algorithm which takes term weight and spatial
locations of keypoints into account. Consequently, the semantic information is
preserved. Second a technique is used to detect the domain specific ‘non-informative
visual words’ which are ineffective at representing the content of visual data and
degrade its categorisation ability. Third, a method to combine an ontology model with
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a visual word model to resolve synonym (visual heterogeneity) and polysemy
problems, is proposed. The experimental results show that this approach can discover
semantically meaningful visual content descriptions and recognise specific events,
e.g., sports events, depicted in images efficiently.
Since discovering the semantics of an image is an extremely challenging problem, one
promising approach to enhance visual content interpretation is to use any associated
textual information that accompanies an image, as a cue to predict the meaning of an
image, by transforming this textual information into a structured annotation for an
image e.g. using XML, RDF, OWL or MPEG-7. Although, text and image are distinct
types of information representation and modality, there are some strong, invariant,
implicit, connections between images and any accompanying text information.
Semantic analysis of image captions can be used by image retrieval systems to
retrieve selected images more precisely. To do this, a Natural Language Processing
(NLP) is exploited firstly in order to extract concepts from image captions. Next, an
ontology-based knowledge model is deployed in order to resolve natural language
ambiguities. To deal with the accompanying text information, two methods to extract
knowledge from textual information have been proposed. First, metadata can be
extracted automatically from text captions and restructured with respect to a semantic
model. Second, the use of LSI in relation to a domain-specific ontology-based
knowledge model enables the combined framework to tolerate ambiguities and
variations (incompleteness) of metadata. The use of the ontology-based knowledge
model allows the system to find indirectly relevant concepts in image captions and
thus leverage these to represent the semantics of images at a higher level.
Experimental results show that the proposed framework significantly enhances image
retrieval and leads to narrowing of the semantic gap between lower level machinederived
and higher level human-understandable conceptualisation
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