Clear and Compress: Computing Persistent Homology in Chunks

We present a parallelizable algorithm for computing the persistent homology of a filtered chain complex. Our approach differs from the commonly used reduction algorithm by first computing persistence pairs within local chunks, then simplifying the unpaired columns, and finally applying standard reduction on the simplified matrix. The approach generalizes a technique by G\"unther et al., which uses discrete Morse Theory to compute persistence; we derive the same worst-case complexity bound in a more general context. The algorithm employs several practical optimization techniques which are of independent interest. Our sequential implementation of the algorithm is competitive with state-of-the-art methods, and we improve the performance through parallelized computation.Comment: This result was presented at TopoInVis 2013 (http://www.sci.utah.edu/topoinvis13.html

A Hybrid Multi-GPU Implementation of Simplex Algorithm with CPU Collaboration

The simplex algorithm has been successfully used for many years in solving linear programming (LP) problems. Due to the intensive computations required (especially for the solution of large LP problems), parallel approaches have also extensively been studied. The computational power provided by the modern GPUs as well as the rapid development of multicore CPU systems have led OpenMP and CUDA programming models to the top preferences during the last years. However, the desired efficient collaboration between CPU and GPU through the combined use of the above programming models is still considered a hard research problem. In the above context, we demonstrate here an excessively efficient implementation of standard simplex, targeting to the best possible exploitation of the concurrent use of all the computing resources, on a multicore platform with multiple CUDA-enabled GPUs. More concretely, we present a novel hybrid collaboration scheme which is based on the concurrent execution of suitably spread CPU-assigned (via multithreading) and GPU-offloaded computations. The experimental results extracted through the cooperative use of OpenMP and CUDA over a notably powerful modern hybrid platform (consisting of 32 cores and two high-spec GPUs, Titan Rtx and Rtx 2080Ti) highlight that the performance of the presented here hybrid GPU/CPU collaboration scheme is clearly superior to the GPU-only implementation under almost all conditions. The corresponding measurements validate the value of using all resources concurrently, even in the case of a multi-GPU configuration platform. Furthermore, the given implementations are completely comparable (and slightly superior in most cases) to other related attempts in the bibliography, and clearly superior to the native CPU-implementation with 32 cores.Comment: 12 page

JuliBootS: a hands-on guide to the conformal bootstrap

We introduce {\tt JuliBootS}, a package for numerical conformal bootstrap computations coded in {\tt Julia}. The centre-piece of {\tt JuliBootS} is an implementation of Dantzig's simplex method capable of handling arbitrary precision linear programming problems with continuous search spaces. Current supported features include conformal dimension bounds, OPE bounds, and bootstrap with or without global symmetries. The code is trivially parallelizable on one or multiple machines. We exemplify usage extensively with several real-world applications. In passing we give a pedagogical introduction to the numerical bootstrap methods.Comment: 29 page