Digital Complex Correlator for a C-band Polarimetry survey

The international Galactic Emission Mapping project aims to map and characterize the polarization field of the Milky Way. In Portugal it will cartograph the C-band sky polarized emission of the Northern Hemisphere and provide templates for map calibration and foreground control of microwave space probes like ESA Planck Surveyor mission. The receiver system is equipped with a novel receiver with a full digital back-end using an Altera Field Programmable Gate Array, having a very favorable cost/performance relation. This new digital backend comprises a base-band complex cross-correlator outputting the four Stokes parameters of the incoming polarized radiation. In this document we describe the design and implementation of the complex correlator using COTS components and a processing FPGA, detailing the method applied in the several algorithm stages and suitable for large sky area surveys.Comment: 15 pages, 10 figures; submitted to Experimental Astronomy, Springe

Reconfigurable acceleration of genetic sequence alignment: A survey of two decades of efforts

Genetic sequence alignment has always been a computational challenge in bioinformatics. Depending on the problem size, software-based aligners can take multiple CPU-days to process the sequence data, creating a bottleneck point in bioinformatic analysis flow. Reconfigurable accelerator can achieve high performance for such computation by providing massive parallelism, but at the expense of programming flexibility and thus has not been commensurately used by practitioners. Therefore, this paper aims to provide a thorough survey of the proposed accelerators by giving a qualitative categorization based on their algorithms and speedup. A comprehensive comparison between work is also presented so as to guide selection for biologist, and to provide insight on future research direction for FPGA scientists