Deformed SPDE models with an application to spatial modeling of significant wave height

A non-stationary Gaussian random field model is developed based on a combination of the stochastic partial differential equation (SPDE) approach and the classical deformation method. With the deformation method, a stationary field is defined on a domain which is deformed so that the field becomes non-stationary. We show that if the stationary field is a Mat'ern field defined as a solution to a fractional SPDE, the resulting non-stationary model can be represented as the solution to another fractional SPDE on the deformed domain. By defining the model in this way, the computational advantages of the SPDE approach can be combined with the deformation method's more intuitive parameterisation of non-stationarity. In particular it allows for independent control over the non-stationary practical correlation range and the variance, which has not been possible with previously proposed non-stationary SPDE models. The model is tested on spatial data of significant wave height, a characteristic of ocean surface conditions which is important when estimating the wear and risks associated with a planned journey of a ship. The model parameters are estimated to data from the north Atlantic using a maximum likelihood approach. The fitted model is used to compute wave height exceedance probabilities and the distribution of accumulated fatigue damage for ships traveling a popular shipping route. The model results agree well with the data, indicating that the model could be used for route optimization in naval logistics.Comment: 22 pages, 12 figure

Scalable iterative methods for sampling from massive Gaussian random vectors

Sampling from Gaussian Markov random fields (GMRFs), that is multivariate Gaussian ran- dom vectors that are parameterised by the inverse of their covariance matrix, is a fundamental problem in computational statistics. In this paper, we show how we can exploit arbitrarily accu- rate approximations to a GMRF to speed up Krylov subspace sampling methods. We also show that these methods can be used when computing the normalising constant of a large multivariate Gaussian distribution, which is needed for both any likelihood-based inference method. The method we derive is also applicable to other structured Gaussian random vectors and, in particu- lar, we show that when the precision matrix is a perturbation of a (block) circulant matrix, it is still possible to derive O(n log n) sampling schemes.Comment: 17 Pages, 4 Figure

Sequential Gaussian Processes for Online Learning of Nonstationary Functions

Many machine learning problems can be framed in the context of estimating functions, and often these are time-dependent functions that are estimated in real-time as observations arrive. Gaussian processes (GPs) are an attractive choice for modeling real-valued nonlinear functions due to their flexibility and uncertainty quantification. However, the typical GP regression model suffers from several drawbacks: i) Conventional GP inference scales $O(N^{3})$ with respect to the number of observations; ii) updating a GP model sequentially is not trivial; and iii) covariance kernels often enforce stationarity constraints on the function, while GPs with non-stationary covariance kernels are often intractable to use in practice. To overcome these issues, we propose an online sequential Monte Carlo algorithm to fit mixtures of GPs that capture non-stationary behavior while allowing for fast, distributed inference. By formulating hyperparameter optimization as a multi-armed bandit problem, we accelerate mixing for real time inference. Our approach empirically improves performance over state-of-the-art methods for online GP estimation in the context of prediction for simulated non-stationary data and hospital time series data

String and Membrane Gaussian Processes

In this paper we introduce a novel framework for making exact nonparametric Bayesian inference on latent functions, that is particularly suitable for Big Data tasks. Firstly, we introduce a class of stochastic processes we refer to as string Gaussian processes (string GPs), which are not to be mistaken for Gaussian processes operating on text. We construct string GPs so that their finite-dimensional marginals exhibit suitable local conditional independence structures, which allow for scalable, distributed, and flexible nonparametric Bayesian inference, without resorting to approximations, and while ensuring some mild global regularity constraints. Furthermore, string GP priors naturally cope with heterogeneous input data, and the gradient of the learned latent function is readily available for explanatory analysis. Secondly, we provide some theoretical results relating our approach to the standard GP paradigm. In particular, we prove that some string GPs are Gaussian processes, which provides a complementary global perspective on our framework. Finally, we derive a scalable and distributed MCMC scheme for supervised learning tasks under string GP priors. The proposed MCMC scheme has computational time complexity $\mathcal{O}(N)$ and memory requirement $\mathcal{O}(dN)$, where $N$ is the data size and $d$ the dimension of the input space. We illustrate the efficacy of the proposed approach on several synthetic and real-world datasets, including a dataset with $6$ millions input points and $8$ attributes.Comment: To appear in the Journal of Machine Learning Research (JMLR), Volume 1

Compression and Conditional Emulation of Climate Model Output

Numerical climate model simulations run at high spatial and temporal resolutions generate massive quantities of data. As our computing capabilities continue to increase, storing all of the data is not sustainable, and thus it is important to develop methods for representing the full datasets by smaller compressed versions. We propose a statistical compression and decompression algorithm based on storing a set of summary statistics as well as a statistical model describing the conditional distribution of the full dataset given the summary statistics. The statistical model can be used to generate realizations representing the full dataset, along with characterizations of the uncertainties in the generated data. Thus, the methods are capable of both compression and conditional emulation of the climate models. Considerable attention is paid to accurately modeling the original dataset--one year of daily mean temperature data--particularly with regard to the inherent spatial nonstationarity in global fields, and to determining the statistics to be stored, so that the variation in the original data can be closely captured, while allowing for fast decompression and conditional emulation on modest computers