Codes for Asymmetric Limited-Magnitude Errors With Application to Multilevel Flash Memories

Several physical effects that limit the reliability and performance of multilevel flash memories induce errors that have low magnitudes and are dominantly asymmetric. This paper studies block codes for asymmetric limited-magnitude errors over q-ary channels. We propose code constructions and bounds for such channels when the number of errors is bounded by t and the error magnitudes are bounded by ℓ. The constructions utilize known codes for symmetric errors, over small alphabets, to protect large-alphabet symbols from asymmetric limited-magnitude errors. The encoding and decoding of these codes are performed over the small alphabet whose size depends only on the maximum error magnitude and is independent of the alphabet size of the outer code. Moreover, the size of the codes is shown to exceed the sizes of known codes (for related error models), and asymptotic rate-optimality results are proved. Extensions of the construction are proposed to accommodate variations on the error model and to include systematic codes as a benefit to practical implementation

Correcting Charge-Constrained Errors in the Rank-Modulation Scheme

We investigate error-correcting codes for a the rank-modulation scheme with an application to flash memory devices. In this scheme, a set of n cells stores information in the permutation induced by the different charge levels of the individual cells. The resulting scheme eliminates the need for discrete cell levels, overcomes overshoot errors when programming cells (a serious problem that reduces the writing speed), and mitigates the problem of asymmetric errors. In this paper, we study the properties of error-correcting codes for charge-constrained errors in the rank-modulation scheme. In this error model the number of errors corresponds to the minimal number of adjacent transpositions required to change a given stored permutation to another erroneous one—a distance measure known as Kendall’s τ-distance.We show bounds on the size of such codes, and use metric-embedding techniques to give constructions which translate a wealth of knowledge of codes in the Lee metric to codes over permutations in Kendall’s τ-metric. Specifically, the one-error-correcting codes we construct are at least half the ball-packing upper bound

Recovering Sparse Signals Using Sparse Measurement Matrices in Compressed DNA Microarrays

Microarrays (DNA, protein, etc.) are massively parallel affinity-based biosensors capable of detecting and quantifying a large number of different genomic particles simultaneously. Among them, DNA microarrays comprising tens of thousands of probe spots are currently being employed to test multitude of targets in a single experiment. In conventional microarrays, each spot contains a large number of copies of a single probe designed to capture a single target, and, hence, collects only a single data point. This is a wasteful use of the sensing resources in comparative DNA microarray experiments, where a test sample is measured relative to a reference sample. Typically, only a fraction of the total number of genes represented by the two samples is differentially expressed, and, thus, a vast number of probe spots may not provide any useful information. To this end, we propose an alternative design, the so-called compressed microarrays, wherein each spot contains copies of several different probes and the total number of spots is potentially much smaller than the number of targets being tested. Fewer spots directly translates to significantly lower costs due to cheaper array manufacturing, simpler image acquisition and processing, and smaller amount of genomic material needed for experiments. To recover signals from compressed microarray measurements, we leverage ideas from compressive sampling. For sparse measurement matrices, we propose an algorithm that has significantly lower computational complexity than the widely used linear-programming-based methods, and can also recover signals with less sparsity

Low-Complexity Codes for Random and Clustered High-Order Failures in Storage Arrays

RC (Random/Clustered) codes are a new efficient array-code family for recovering from 4-erasures. RC codes correct most 4-erasures, and essentially all 4-erasures that are clustered. Clustered erasures are introduced as a new erasure model for storage arrays. This model draws its motivation from correlated device failures, that are caused by physical proximity of devices, or by age proximity of endurance-limited solid-state drives. The reliability of storage arrays that employ RC codes is analyzed and compared to known codes. The new RC code is significantly more efficient, in all practical implementation factors, than the best known 4-erasure correcting MDS code. These factors include: small-write update-complexity, full-device update-complexity, decoding complexity and number of supported devices in the array

Permutation Decoding and the Stopping Redundancy Hierarchy of Cyclic and Extended Cyclic Codes

We introduce the notion of the stopping redundancy hierarchy of a linear block code as a measure of the trade-off between performance and complexity of iterative decoding for the binary erasure channel. We derive lower and upper bounds for the stopping redundancy hierarchy via Lovasz's Local Lemma and Bonferroni-type inequalities, and specialize them for codes with cyclic parity-check matrices. Based on the observed properties of parity-check matrices with good stopping redundancy characteristics, we develop a novel decoding technique, termed automorphism group decoding, that combines iterative message passing and permutation decoding. We also present bounds on the smallest number of permutations of an automorphism group decoder needed to correct any set of erasures up to a prescribed size. Simulation results demonstrate that for a large number of algebraic codes, the performance of the new decoding method is close to that of maximum likelihood decoding.Comment: 40 pages, 6 figures, 10 tables, submitted to IEEE Transactions on Information Theor

Parallel data compression

Data compression schemes remove data redundancy in communicated and stored data and increase the effective capacities of communication and storage devices. Parallel algorithms and implementations for textual data compression are surveyed. Related concepts from parallel computation and information theory are briefly discussed. Static and dynamic methods for codeword construction and transmission on various models of parallel computation are described. Included are parallel methods which boost system speed by coding data concurrently, and approaches which employ multiple compression techniques to improve compression ratios. Theoretical and empirical comparisons are reported and areas for future research are suggested