Scalable system for large unstructured mesh simulation

Dealing with large simulation is a growing challenge. Ideally for the wellparallelized software prepared for high performance, the problem solving capability depends on the available hardware resources. But in practice there are several technical details which reduce the scalability of the system and prevent the effective use of such a software for large problems. In this work we describe solutions implemented in order to obtain a scalable system to solve and visualize large scale problems. The present work is based on Kratos MutliPhysics [1] framework in combination with GiD [2] pre and post processor. The applied techniques are verified by CFD simulation and visualization of a wind tunnel problem with more than 100 millions of elements in our in-hose cluster in CIMNE.Postprint (published version

A buffer cache management scheme exploiting both temporal and spatial localities

On-disk sequentiality of requested blocks, or their spatial locality, is critical to real disk performance where the throughput of access to sequentially-placed disk blocks can be an order of magnitude higher than that of access to randomly-placed blocks. Unfortunately, spatial locality of cached blocks is largely ignored, and only temporal locality is considered in current system buffer cache managements. Thus, disk performance for workloads without dominant sequential accesses can be seriously degraded. To address this problem, we propose a scheme called DULO (DUal LOcality) which exploits both temporal and spatial localities in the buffer cache management. Leveraging the filtering effect of the buffer cache, DULO can influence the I/O request stream by making the requests passed to the disk more sequential, thus significantly increasing the effectiveness of I/O scheduling and prefetching for disk performance improvements. We have implemented a prototype of DULO in Linux 2.6.11. The implementation shows that DULO can significantly increases disk I/O throughput for real-world applications such as a Web server, TPC benchmark, file system benchmark, and scientific programs. It reduces their execution times by as much as 53%

Metadata And Data Management In High Performance File And Storage Systems

With the advent of emerging e-Science applications, today\u27s scientific research increasingly relies on petascale-and-beyond computing over large data sets of the same magnitude. While the computational power of supercomputers has recently entered the era of petascale, the performance of their storage system is far lagged behind by many orders of magnitude. This places an imperative demand on revolutionizing their underlying I/O systems, on which the management of both metadata and data is deemed to have significant performance implications. Prefetching/caching and data locality awareness optimizations, as conventional and effective management techniques for metadata and data I/O performance enhancement, still play their crucial roles in current parallel and distributed file systems. In this study, we examine the limitations of existing prefetching/caching techniques and explore the untapped potentials of data locality optimization techniques in the new era of petascale computing. For metadata I/O access, we propose a novel weighted-graph-based prefetching technique, built on both direct and indirect successor relationship, to reap performance benefit from prefetching specifically for clustered metadata serversan arrangement envisioned necessary for petabyte scale distributed storage systems. For data I/O access, we design and implement Segment-structured On-disk data Grouping and Prefetching (SOGP), a combined prefetching and data placement technique to boost the local data read performance for parallel file systems, especially for those applications with partially overlapped access patterns. One high-performance local I/O software package in SOGP work for Parallel Virtual File System in the number of about 2000 C lines was released to Argonne National Laboratory in 2007 for potential integration into the production mode

File System Simulation: Hierarchical Performance Measurement and Modeling

File systems are very important components in a computer system. File system simulation can help to predict the performance of new system designs. It offers the advantages of the flexibility of modeling and the cost and time savings of utilizing simulation instead of full implementation. Being able to predict end-to-end file system performance against a pre-defined workload can help system designers to make decisions that could affect their entire product line, involving several million dollars of investment. This dissertation presents detailed simulation-based performance models of the Linux ext3 file system and the PVFS parallel file system. The models are developed using Colored Petri Nets. A performance study, using the models, shows that the obtained results are close to the expected behavior of the real file system. The model shows that file system parameters have significant impact on the performance of the I/O when compared to the parameters of the disk subsystem