2,119 research outputs found
A Parallel Solver for Graph Laplacians
Problems from graph drawing, spectral clustering, network flow and graph
partitioning can all be expressed in terms of graph Laplacian matrices. There
are a variety of practical approaches to solving these problems in serial.
However, as problem sizes increase and single core speeds stagnate, parallelism
is essential to solve such problems quickly. We present an unsmoothed
aggregation multigrid method for solving graph Laplacians in a distributed
memory setting. We introduce new parallel aggregation and low degree
elimination algorithms targeted specifically at irregular degree graphs. These
algorithms are expressed in terms of sparse matrix-vector products using
generalized sum and product operations. This formulation is amenable to linear
algebra using arbitrary distributions and allows us to operate on a 2D sparse
matrix distribution, which is necessary for parallel scalability. Our solver
outperforms the natural parallel extension of the current state of the art in
an algorithmic comparison. We demonstrate scalability to 576 processes and
graphs with up to 1.7 billion edges.Comment: PASC '18, Code: https://github.com/ligmg/ligm
Solving the Poisson equation on small aspect ratio domains using unstructured meshes
We discuss the ill conditioning of the matrix for the discretised Poisson
equation in the small aspect ratio limit, and motivate this problem in the
context of nonhydrostatic ocean modelling. Efficient iterative solvers for the
Poisson equation in small aspect ratio domains are crucial for the successful
development of nonhydrostatic ocean models on unstructured meshes. We introduce
a new multigrid preconditioner for the Poisson problem which can be used with
finite element discretisations on general unstructured meshes; this
preconditioner is motivated by the fact that the Poisson problem has a
condition number which is independent of aspect ratio when Dirichlet boundary
conditions are imposed on the top surface of the domain. This leads to the
first level in an algebraic multigrid solver (which can be extended by further
conventional algebraic multigrid stages), and an additive smoother. We
illustrate the method with numerical tests on unstructured meshes, which show
that the preconditioner makes a dramatic improvement on a more standard
multigrid preconditioner approach, and also show that the additive smoother
produces better results than standard SOR smoothing. This new solver method
makes it feasible to run nonhydrostatic unstructured mesh ocean models in small
aspect ratio domains.Comment: submitted to Ocean Modellin
Parallel accelerated cyclic reduction preconditioner for three-dimensional elliptic PDEs with variable coefficients
We present a robust and scalable preconditioner for the solution of
large-scale linear systems that arise from the discretization of elliptic PDEs
amenable to rank compression. The preconditioner is based on hierarchical
low-rank approximations and the cyclic reduction method. The setup and
application phases of the preconditioner achieve log-linear complexity in
memory footprint and number of operations, and numerical experiments exhibit
good weak and strong scalability at large processor counts in a distributed
memory environment. Numerical experiments with linear systems that feature
symmetry and nonsymmetry, definiteness and indefiniteness, constant and
variable coefficients demonstrate the preconditioner applicability and
robustness. Furthermore, it is possible to control the number of iterations via
the accuracy threshold of the hierarchical matrix approximations and their
arithmetic operations, and the tuning of the admissibility condition parameter.
Together, these parameters allow for optimization of the memory requirements
and performance of the preconditioner.Comment: 24 pages, Elsevier Journal of Computational and Applied Mathematics,
Dec 201
Boundary Treatment and Multigrid Preconditioning for Semi-Lagrangian Schemes Applied to Hamilton-Jacobi-Bellman Equations
We analyse two practical aspects that arise in the numerical solution of
Hamilton-Jacobi-Bellman (HJB) equations by a particular class of monotone
approximation schemes known as semi-Lagrangian schemes. These schemes make use
of a wide stencil to achieve convergence and result in discretization matrices
that are less sparse and less local than those coming from standard finite
difference schemes. This leads to computational difficulties not encountered
there. In particular, we consider the overstepping of the domain boundary and
analyse the accuracy and stability of stencil truncation. This truncation
imposes a stricter CFL condition for explicit schemes in the vicinity of
boundaries than in the interior, such that implicit schemes become attractive.
We then study the use of geometric, algebraic and aggregation-based multigrid
preconditioners to solve the resulting discretised systems from implicit time
stepping schemes efficiently. Finally, we illustrate the performance of these
techniques numerically for benchmark test cases from the literature
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