53,786 research outputs found
Query DAGs: A Practical Paradigm for Implementing Belief-Network Inference
We describe a new paradigm for implementing inference in belief networks,
which consists of two steps: (1) compiling a belief network into an arithmetic
expression called a Query DAG (Q-DAG); and (2) answering queries using a simple
evaluation algorithm. Each node of a Q-DAG represents a numeric operation, a
number, or a symbol for evidence. Each leaf node of a Q-DAG represents the
answer to a network query, that is, the probability of some event of interest.
It appears that Q-DAGs can be generated using any of the standard algorithms
for exact inference in belief networks (we show how they can be generated using
clustering and conditioning algorithms). The time and space complexity of a
Q-DAG generation algorithm is no worse than the time complexity of the
inference algorithm on which it is based. The complexity of a Q-DAG evaluation
algorithm is linear in the size of the Q-DAG, and such inference amounts to a
standard evaluation of the arithmetic expression it represents. The intended
value of Q-DAGs is in reducing the software and hardware resources required to
utilize belief networks in on-line, real-world applications. The proposed
framework also facilitates the development of on-line inference on different
software and hardware platforms due to the simplicity of the Q-DAG evaluation
algorithm. Interestingly enough, Q-DAGs were found to serve other purposes:
simple techniques for reducing Q-DAGs tend to subsume relatively complex
optimization techniques for belief-network inference, such as network-pruning
and computation-caching.Comment: See http://www.jair.org/ for any accompanying file
An agent-driven semantical identifier using radial basis neural networks and reinforcement learning
Due to the huge availability of documents in digital form, and the deception
possibility raise bound to the essence of digital documents and the way they
are spread, the authorship attribution problem has constantly increased its
relevance. Nowadays, authorship attribution,for both information retrieval and
analysis, has gained great importance in the context of security, trust and
copyright preservation. This work proposes an innovative multi-agent driven
machine learning technique that has been developed for authorship attribution.
By means of a preprocessing for word-grouping and time-period related analysis
of the common lexicon, we determine a bias reference level for the recurrence
frequency of the words within analysed texts, and then train a Radial Basis
Neural Networks (RBPNN)-based classifier to identify the correct author. The
main advantage of the proposed approach lies in the generality of the semantic
analysis, which can be applied to different contexts and lexical domains,
without requiring any modification. Moreover, the proposed system is able to
incorporate an external input, meant to tune the classifier, and then
self-adjust by means of continuous learning reinforcement.Comment: Published on: Proceedings of the XV Workshop "Dagli Oggetti agli
Agenti" (WOA 2014), Catania, Italy, Sepember. 25-26, 201
Detection of regulator genes and eQTLs in gene networks
Genetic differences between individuals associated to quantitative phenotypic
traits, including disease states, are usually found in non-coding genomic
regions. These genetic variants are often also associated to differences in
expression levels of nearby genes (they are "expression quantitative trait
loci" or eQTLs for short) and presumably play a gene regulatory role, affecting
the status of molecular networks of interacting genes, proteins and
metabolites. Computational systems biology approaches to reconstruct causal
gene networks from large-scale omics data have therefore become essential to
understand the structure of networks controlled by eQTLs together with other
regulatory genes, and to generate detailed hypotheses about the molecular
mechanisms that lead from genotype to phenotype. Here we review the main
analytical methods and softwares to identify eQTLs and their associated genes,
to reconstruct co-expression networks and modules, to reconstruct causal
Bayesian gene and module networks, and to validate predicted networks in
silico.Comment: minor revision with typos corrected; review article; 24 pages, 2
figure
Scalable Approach to Uncertainty Quantification and Robust Design of Interconnected Dynamical Systems
Development of robust dynamical systems and networks such as autonomous
aircraft systems capable of accomplishing complex missions faces challenges due
to the dynamically evolving uncertainties coming from model uncertainties,
necessity to operate in a hostile cluttered urban environment, and the
distributed and dynamic nature of the communication and computation resources.
Model-based robust design is difficult because of the complexity of the hybrid
dynamic models including continuous vehicle dynamics, the discrete models of
computations and communications, and the size of the problem. We will overview
recent advances in methodology and tools to model, analyze, and design robust
autonomous aerospace systems operating in uncertain environment, with stress on
efficient uncertainty quantification and robust design using the case studies
of the mission including model-based target tracking and search, and trajectory
planning in uncertain urban environment. To show that the methodology is
generally applicable to uncertain dynamical systems, we will also show examples
of application of the new methods to efficient uncertainty quantification of
energy usage in buildings, and stability assessment of interconnected power
networks
How to understand the cell by breaking it: network analysis of gene perturbation screens
Modern high-throughput gene perturbation screens are key technologies at the
forefront of genetic research. Combined with rich phenotypic descriptors they
enable researchers to observe detailed cellular reactions to experimental
perturbations on a genome-wide scale. This review surveys the current
state-of-the-art in analyzing perturbation screens from a network point of
view. We describe approaches to make the step from the parts list to the wiring
diagram by using phenotypes for network inference and integrating them with
complementary data sources. The first part of the review describes methods to
analyze one- or low-dimensional phenotypes like viability or reporter activity;
the second part concentrates on high-dimensional phenotypes showing global
changes in cell morphology, transcriptome or proteome.Comment: Review based on ISMB 2009 tutorial; after two rounds of revisio
- …