62,329 research outputs found
A note on segmentation of computer programs
It has been shown that the cycle picture of the directed graph of a computer program can be used to solve the segmentation problem. A simple algorithm for finding the cycle picture is given
Blending Learning and Inference in Structured Prediction
In this paper we derive an efficient algorithm to learn the parameters of
structured predictors in general graphical models. This algorithm blends the
learning and inference tasks, which results in a significant speedup over
traditional approaches, such as conditional random fields and structured
support vector machines. For this purpose we utilize the structures of the
predictors to describe a low dimensional structured prediction task which
encourages local consistencies within the different structures while learning
the parameters of the model. Convexity of the learning task provides the means
to enforce the consistencies between the different parts. The
inference-learning blending algorithm that we propose is guaranteed to converge
to the optimum of the low dimensional primal and dual programs. Unlike many of
the existing approaches, the inference-learning blending allows us to learn
efficiently high-order graphical models, over regions of any size, and very
large number of parameters. We demonstrate the effectiveness of our approach,
while presenting state-of-the-art results in stereo estimation, semantic
segmentation, shape reconstruction, and indoor scene understanding
Optimization-based interactive segmentation interface for multiregion problems.
Interactive segmentation is becoming of increasing interest to the medical imaging community in that it combines the positive aspects of both manual and automated segmentation. However, general-purpose tools have been lacking in terms of segmenting multiple regions simultaneously with a high degree of coupling between groups of labels. Hierarchical max-flow segmentation has taken advantage of this coupling for individual applications, but until recently, these algorithms were constrained to a particular hierarchy and could not be considered general-purpose. In a generalized form, the hierarchy for any given segmentation problem is specified in run-time, allowing different hierarchies to be quickly explored. We present an interactive segmentation interface, which uses generalized hierarchical max-flow for optimization-based multiregion segmentation guided by user-defined seeds. Applications in cardiac and neonatal brain segmentation are given as example applications of its generality
Large-scale Binary Quadratic Optimization Using Semidefinite Relaxation and Applications
In computer vision, many problems such as image segmentation, pixel
labelling, and scene parsing can be formulated as binary quadratic programs
(BQPs). For submodular problems, cuts based methods can be employed to
efficiently solve large-scale problems. However, general nonsubmodular problems
are significantly more challenging to solve. Finding a solution when the
problem is of large size to be of practical interest, however, typically
requires relaxation. Two standard relaxation methods are widely used for
solving general BQPs--spectral methods and semidefinite programming (SDP), each
with their own advantages and disadvantages. Spectral relaxation is simple and
easy to implement, but its bound is loose. Semidefinite relaxation has a
tighter bound, but its computational complexity is high, especially for large
scale problems. In this work, we present a new SDP formulation for BQPs, with
two desirable properties. First, it has a similar relaxation bound to
conventional SDP formulations. Second, compared with conventional SDP methods,
the new SDP formulation leads to a significantly more efficient and scalable
dual optimization approach, which has the same degree of complexity as spectral
methods. We then propose two solvers, namely, quasi-Newton and smoothing Newton
methods, for the dual problem. Both of them are significantly more efficiently
than standard interior-point methods. In practice, the smoothing Newton solver
is faster than the quasi-Newton solver for dense or medium-sized problems,
while the quasi-Newton solver is preferable for large sparse/structured
problems. Our experiments on a few computer vision applications including
clustering, image segmentation, co-segmentation and registration show the
potential of our SDP formulation for solving large-scale BQPs.Comment: Fixed some typos. 18 pages. Accepted to IEEE Transactions on Pattern
Analysis and Machine Intelligenc
Automation Process for Morphometric Analysis of Volumetric CT Data from Pulmonary Vasculature in Rats
With advances in medical imaging scanners, it has become commonplace to generate large multidimensional datasets. These datasets require tools for a rapid, thorough analysis. To address this need, we have developed an automated algorithm for morphometric analysis incorporating A Visualization Workshop computational and image processing libraries for three-dimensional segmentation, vascular tree generation and structural hierarchical ordering with a two-stage numeric optimization procedure for estimating vessel diameters. We combine this new technique with our mathematical models of pulmonary vascular morphology to quantify structural and functional attributes of lung arterial trees. Our physiological studies require repeated measurements of vascular structure to determine differences in vessel biomechanical properties between animal models of pulmonary disease. Automation provides many advantages including significantly improved speed and minimized operator interaction and biasing. The results are validated by comparison with previously published rat pulmonary arterial micro-CT data analysis techniques, in which vessels were manually mapped and measured using intense operator intervention
Decreasing time consumption of microscopy image segmentation through parallel processing on the GPU
The computational performance of graphical processing units (GPUs) has improved significantly. Achieving speedup factors of more than 50x compared to single-threaded CPU execution are not uncommon due to parallel processing. This makes their use for high throughput microscopy image analysis very appealing. Unfortunately, GPU programming is not straightforward and requires a lot of programming skills and effort. Additionally, the attainable speedup factor is hard to predict, since it depends on the type of algorithm, input data and the way in which the algorithm is implemented. In this paper, we identify the characteristic algorithm and data-dependent properties that significantly relate to the achievable GPU speedup. We find that the overall GPU speedup depends on three major factors: (1) the coarse-grained parallelism of the algorithm, (2) the size of the data and (3) the computation/memory transfer ratio. This is illustrated on two types of well-known segmentation methods that are extensively used in microscopy image analysis: SLIC superpixels and high-level geometric active contours. In particular, we find that our used geometric active contour segmentation algorithm is very suitable for parallel processing, resulting in acceleration factors of 50x for 0.1 megapixel images and 100x for 10 megapixel images
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