6,859 research outputs found
Semantic Description, Publication and Discovery of Workflows in myGrid
The bioinformatics scientific process relies on in silico experiments, which are experiments executed in full in a computational environment. Scientists wish to encode the designs of these experiments as workflows because they provide minimal, declarative descriptions of the designs, overcoming many barriers to the sharing and re-use of these designs between scientists and enable the use of the most appropriate services available at any one time. We anticipate that the number of workflows will increase quickly as more scientists begin to make use of existing workflow construction tools to express their experiment designs. Discovery then becomes an increasingly hard problem, as it becomes more difficult for a scientist to identify the workflows relevant to their particular research goals amongst all those on offer. While many approaches exist for the publishing and discovery of services, there have been few attempts to address where and how authors of experimental designs should advertise the availability of their work or how relevant workflows can be discovered with minimal effort from the user. As the users designing and adapting experiments will not necessarily have a computer science background, we also have to consider how publishing and discovery can be achieved in such a way that they are not required to have detailed technical knowledge of workflow scripting languages. Furthermore, we believe they should be able to make use of others' expert knowledge (the semantics) of the given scientific domain. In this paper, we define the issues related to the semantic description, publishing and discovery of workflows, and demonstrate how the architecture created by the myGrid project aids scientists in this process. We give a walk-through of how users can construct, publish, annotate, discover and enact workflows via the user interfaces of the myGrid architecture; we then describe novel middleware protocols, making use of the Semantic Web technologies RDF and OWL to support workflow publishing and discovery
Realization of Semantic Atom Blog
Web blog is used as a collaborative platform to publish and share
information. The information accumulated in the blog intrinsically contains the
knowledge. The knowledge shared by the community of people has intangible value
proposition. The blog is viewed as a multimedia information resource available
on the Internet. In a blog, information in the form of text, image, audio and
video builds up exponentially. The multimedia information contained in an Atom
blog does not have the capability, which is required by the software processes
so that Atom blog content can be accessed, processed and reused over the
Internet. This shortcoming is addressed by exploring OWL knowledge modeling,
semantic annotation and semantic categorization techniques in an Atom blog
sphere. By adopting these techniques, futuristic Atom blogs can be created and
deployed over the Internet
IVOA Recommendation: VOResource: an XML Encoding Schema for Resource Metadata Version 1.03
This document describes an XML encoding standard for IVOA Resource Metadata,
referred to as VOResource. This schema is primarily intended to support
interoperable registries used for discovering resources; however, any
application that needs to describe resources may use this schema. In this
document, we define the types and elements that make up the schema as
representations of metadata terms defined in the IVOA standard, Resource
Metadata for the Virtual Observatory [Hanicsh et al. 2004]. We also describe
the general model for the schema and explain how it may be extended to add new
metadata terms and describe more specific types of resources
Pathways: Augmenting interoperability across scholarly repositories
In the emerging eScience environment, repositories of papers, datasets,
software, etc., should be the foundation of a global and natively-digital
scholarly communications system. The current infrastructure falls far short of
this goal. Cross-repository interoperability must be augmented to support the
many workflows and value-chains involved in scholarly communication. This will
not be achieved through the promotion of single repository architecture or
content representation, but instead requires an interoperability framework to
connect the many heterogeneous systems that will exist.
We present a simple data model and service architecture that augments
repository interoperability to enable scholarly value-chains to be implemented.
We describe an experiment that demonstrates how the proposed infrastructure can
be deployed to implement the workflow involved in the creation of an overlay
journal over several different repository systems (Fedora, aDORe, DSpace and
arXiv).Comment: 18 pages. Accepted for International Journal on Digital Libraries
special issue on Digital Libraries and eScienc
Provenance-based validation of E-science experiments
E-Science experiments typically involve many distributed services maintained by different organisations. After an experiment has been executed, it is useful for a scientist to verify that the execution was performed correctly or is compatible with some existing experimental criteria or standards. Scientists may also want to review and verify experiments performed by their colleagues. There are no existing frameworks for validating such experiments in today's e-Science systems. Users therefore have to rely on error checking performed by the services, or adopt other ad hoc methods. This paper introduces a platform-independent framework for validating workflow executions. The validation relies on reasoning over the documented provenance of experiment results and semantic descriptions of services advertised in a registry. This validation process ensures experiments are performed correctly, and thus results generated are meaningful. The framework is tested in a bioinformatics application that performs protein compressibility analysis
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Global integration of public sector information
This paper deals with technological methods for consolidating assets lists of available public sector information (PSI) for re-use. In this direction, the effort is to review the state of the art in delivering access to PSI throughout the world and to prioritize the necessary engagements for joining available PSI catalogues. We propose an architectural framework grounded on Semantic Web technologies to deliver a global platform for federated searching. A speculative survey of available PSI portals is presented, and the initial implementation, results, and analysis of the proposed architecture are covered in detail
Knowledge Organization Systems (KOS) in the Semantic Web: A Multi-Dimensional Review
Since the Simple Knowledge Organization System (SKOS) specification and its
SKOS eXtension for Labels (SKOS-XL) became formal W3C recommendations in 2009 a
significant number of conventional knowledge organization systems (KOS)
(including thesauri, classification schemes, name authorities, and lists of
codes and terms, produced before the arrival of the ontology-wave) have made
their journeys to join the Semantic Web mainstream. This paper uses "LOD KOS"
as an umbrella term to refer to all of the value vocabularies and lightweight
ontologies within the Semantic Web framework. The paper provides an overview of
what the LOD KOS movement has brought to various communities and users. These
are not limited to the colonies of the value vocabulary constructors and
providers, nor the catalogers and indexers who have a long history of applying
the vocabularies to their products. The LOD dataset producers and LOD service
providers, the information architects and interface designers, and researchers
in sciences and humanities, are also direct beneficiaries of LOD KOS. The paper
examines a set of the collected cases (experimental or in real applications)
and aims to find the usages of LOD KOS in order to share the practices and
ideas among communities and users. Through the viewpoints of a number of
different user groups, the functions of LOD KOS are examined from multiple
dimensions. This paper focuses on the LOD dataset producers, vocabulary
producers, and researchers (as end-users of KOS).Comment: 31 pages, 12 figures, accepted paper in International Journal on
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