35,537 research outputs found
Creating Fair Models of Atherosclerotic Cardiovascular Disease Risk
Guidelines for the management of atherosclerotic cardiovascular disease
(ASCVD) recommend the use of risk stratification models to identify patients
most likely to benefit from cholesterol-lowering and other therapies. These
models have differential performance across race and gender groups with
inconsistent behavior across studies, potentially resulting in an inequitable
distribution of beneficial therapy. In this work, we leverage adversarial
learning and a large observational cohort extracted from electronic health
records (EHRs) to develop a "fair" ASCVD risk prediction model with reduced
variability in error rates across groups. We empirically demonstrate that our
approach is capable of aligning the distribution of risk predictions
conditioned on the outcome across several groups simultaneously for models
built from high-dimensional EHR data. We also discuss the relevance of these
results in the context of the empirical trade-off between fairness and model
performance
Toward a Standardized Strategy of Clinical Metabolomics for the Advancement of Precision Medicine
Despite the tremendous success, pitfalls have been observed in every step of a clinical metabolomics workflow, which impedes the internal validity of the study. Furthermore, the demand for logistics, instrumentations, and computational resources for metabolic phenotyping studies has far exceeded our expectations. In this conceptual review, we will cover inclusive barriers of a metabolomics-based clinical study and suggest potential solutions in the hope of enhancing study robustness, usability, and transferability. The importance of quality assurance and quality control procedures is discussed, followed by a practical rule containing five phases, including two additional "pre-pre-" and "post-post-" analytical steps. Besides, we will elucidate the potential involvement of machine learning and demonstrate that the need for automated data mining algorithms to improve the quality of future research is undeniable. Consequently, we propose a comprehensive metabolomics framework, along with an appropriate checklist refined from current guidelines and our previously published assessment, in the attempt to accurately translate achievements in metabolomics into clinical and epidemiological research. Furthermore, the integration of multifaceted multi-omics approaches with metabolomics as the pillar member is in urgent need. When combining with other social or nutritional factors, we can gather complete omics profiles for a particular disease. Our discussion reflects the current obstacles and potential solutions toward the progressing trend of utilizing metabolomics in clinical research to create the next-generation healthcare system.11Ysciescopu
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Investigation of Machine Learning Approaches for Traumatic Brain Injury Classification via EEG Assessment in Mice.
Due to the difficulties and complications in the quantitative assessment of traumatic brain injury (TBI) and its increasing relevance in today's world, robust detection of TBI has become more significant than ever. In this work, we investigate several machine learning approaches to assess their performance in classifying electroencephalogram (EEG) data of TBI in a mouse model. Algorithms such as decision trees (DT), random forest (RF), neural network (NN), support vector machine (SVM), K-nearest neighbors (KNN) and convolutional neural network (CNN) were analyzed based on their performance to classify mild TBI (mTBI) data from those of the control group in wake stages for different epoch lengths. Average power in different frequency sub-bands and alpha:theta power ratio in EEG were used as input features for machine learning approaches. Results in this mouse model were promising, suggesting similar approaches may be applicable to detect TBI in humans in practical scenarios
An Automated System for Epilepsy Detection using EEG Brain Signals based on Deep Learning Approach
Epilepsy is a neurological disorder and for its detection, encephalography
(EEG) is a commonly used clinical approach. Manual inspection of EEG brain
signals is a time-consuming and laborious process, which puts heavy burden on
neurologists and affects their performance. Several automatic techniques have
been proposed using traditional approaches to assist neurologists in detecting
binary epilepsy scenarios e.g. seizure vs. non-seizure or normal vs. ictal.
These methods do not perform well when classifying ternary case e.g. ictal vs.
normal vs. inter-ictal; the maximum accuracy for this case by the
state-of-the-art-methods is 97+-1%. To overcome this problem, we propose a
system based on deep learning, which is an ensemble of pyramidal
one-dimensional convolutional neural network (P-1D-CNN) models. In a CNN model,
the bottleneck is the large number of learnable parameters. P-1D-CNN works on
the concept of refinement approach and it results in 60% fewer parameters
compared to traditional CNN models. Further to overcome the limitations of
small amount of data, we proposed augmentation schemes for learning P-1D-CNN
model. In almost all the cases concerning epilepsy detection, the proposed
system gives an accuracy of 99.1+-0.9% on the University of Bonn dataset.Comment: 18 page
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