Ranking relations using analogies in biological and information networks

Analogical reasoning depends fundamentally on the ability to learn and generalize about relations between objects. We develop an approach to relational learning which, given a set of pairs of objects $\mathbf{S}=\{A^{(1)}:B^{(1)},A^{(2)}:B^{(2)},\ldots,A^{(N)}:B ^{(N)}\}$, measures how well other pairs A:B fit in with the set $\mathbf{S}$. Our work addresses the following question: is the relation between objects A and B analogous to those relations found in $\mathbf{S}$? Such questions are particularly relevant in information retrieval, where an investigator might want to search for analogous pairs of objects that match the query set of interest. There are many ways in which objects can be related, making the task of measuring analogies very challenging. Our approach combines a similarity measure on function spaces with Bayesian analysis to produce a ranking. It requires data containing features of the objects of interest and a link matrix specifying which relationships exist; no further attributes of such relationships are necessary. We illustrate the potential of our method on text analysis and information networks. An application on discovering functional interactions between pairs of proteins is discussed in detail, where we show that our approach can work in practice even if a small set of protein pairs is provided.Comment: Published in at http://dx.doi.org/10.1214/09-AOAS321 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org

Integration of linked open data in case-based reasoning systems

This paper discusses the opportunities of integrating Linked Open Data (LOD) resources into Case-Based Reasoning (CBR) systems. Upon the application domain travel medicine, we will exemplify how LOD can be used to fill three out of four knowledge containers a CBR system is based on. The paper also presents the applied techniques for the realization and demonstrates the performance gain of knowledge acquisition by the use of LOD

A Survey of Volunteered Open Geo-Knowledge Bases in the Semantic Web

Over the past decade, rapid advances in web technologies, coupled with innovative models of spatial data collection and consumption, have generated a robust growth in geo-referenced information, resulting in spatial information overload. Increasing 'geographic intelligence' in traditional text-based information retrieval has become a prominent approach to respond to this issue and to fulfill users' spatial information needs. Numerous efforts in the Semantic Geospatial Web, Volunteered Geographic Information (VGI), and the Linking Open Data initiative have converged in a constellation of open knowledge bases, freely available online. In this article, we survey these open knowledge bases, focusing on their geospatial dimension. Particular attention is devoted to the crucial issue of the quality of geo-knowledge bases, as well as of crowdsourced data. A new knowledge base, the OpenStreetMap Semantic Network, is outlined as our contribution to this area. Research directions in information integration and Geographic Information Retrieval (GIR) are then reviewed, with a critical discussion of their current limitations and future prospects

Estimating Fire Weather Indices via Semantic Reasoning over Wireless Sensor Network Data Streams

Wildfires are frequent, devastating events in Australia that regularly cause significant loss of life and widespread property damage. Fire weather indices are a widely-adopted method for measuring fire danger and they play a significant role in issuing bushfire warnings and in anticipating demand for bushfire management resources. Existing systems that calculate fire weather indices are limited due to low spatial and temporal resolution. Localized wireless sensor networks, on the other hand, gather continuous sensor data measuring variables such as air temperature, relative humidity, rainfall and wind speed at high resolutions. However, using wireless sensor networks to estimate fire weather indices is a challenge due to data quality issues, lack of standard data formats and lack of agreement on thresholds and methods for calculating fire weather indices. Within the scope of this paper, we propose a standardized approach to calculating Fire Weather Indices (a.k.a. fire danger ratings) and overcome a number of the challenges by applying Semantic Web Technologies to the processing of data streams from a wireless sensor network deployed in the Springbrook region of South East Queensland. This paper describes the underlying ontologies, the semantic reasoning and the Semantic Fire Weather Index (SFWI) system that we have developed to enable domain experts to specify and adapt rules for calculating Fire Weather Indices. We also describe the Web-based mapping interface that we have developed, that enables users to improve their understanding of how fire weather indices vary over time within a particular region.Finally, we discuss our evaluation results that indicate that the proposed system outperforms state-of-the-art techniques in terms of accuracy, precision and query performance.Comment: 20pages, 12 figure

Geometric reasoning via internet crowdsourcing

The ability to interpret and reason about shapes is a peculiarly human capability that has proven difficult to reproduce algorithmically. So despite the fact that geometric modeling technology has made significant advances in the representation, display and modification of shapes, there have only been incremental advances in geometric reasoning. For example, although today's CAD systems can confidently identify isolated cylindrical holes, they struggle with more ambiguous tasks such as the identification of partial symmetries or similarities in arbitrary geometries. Even well defined problems such as 2D shape nesting or 3D packing generally resist elegant solution and rely instead on brute force explorations of a subset of the many possible solutions. Identifying economic ways to solving such problems would result in significant productivity gains across a wide range of industrial applications. The authors hypothesize that Internet Crowdsourcing might provide a pragmatic way of removing many geometric reasoning bottlenecks.This paper reports the results of experiments conducted with Amazon's mTurk site and designed to determine the feasibility of using Internet Crowdsourcing to carry out geometric reasoning tasks as well as establish some benchmark data for the quality, speed and costs of using this approach.After describing the general architecture and terminology of the mTurk Crowdsourcing system, the paper details the implementation and results of the following three investigations; 1) the identification of "Canonical" viewpoints for individual shapes, 2) the quantification of "similarity" relationships with-in collections of 3D models and 3) the efficient packing of 2D Strips into rectangular areas. The paper concludes with a discussion of the possibilities and limitations of the approach