1,554 research outputs found
Extracting adverse drug reactions and their context using sequence labelling ensembles in TAC2017
Adverse drug reactions (ADRs) are unwanted or harmful effects experienced
after the administration of a certain drug or a combination of drugs,
presenting a challenge for drug development and drug administration. In this
paper, we present a set of taggers for extracting adverse drug reactions and
related entities, including factors, severity, negations, drug class and
animal. The systems used a mix of rule-based, machine learning (CRF) and deep
learning (BLSTM with word2vec embeddings) methodologies in order to annotate
the data. The systems were submitted to adverse drug reaction shared task,
organised during Text Analytics Conference in 2017 by National Institute for
Standards and Technology, archiving F1-scores of 76.00 and 75.61 respectively.Comment: Paper describing submission for TAC ADR shared tas
Hi, how can I help you?: Automating enterprise IT support help desks
Question answering is one of the primary challenges of natural language
understanding. In realizing such a system, providing complex long answers to
questions is a challenging task as opposed to factoid answering as the former
needs context disambiguation. The different methods explored in the literature
can be broadly classified into three categories namely: 1) classification
based, 2) knowledge graph based and 3) retrieval based. Individually, none of
them address the need of an enterprise wide assistance system for an IT support
and maintenance domain. In this domain the variance of answers is large ranging
from factoid to structured operating procedures; the knowledge is present
across heterogeneous data sources like application specific documentation,
ticket management systems and any single technique for a general purpose
assistance is unable to scale for such a landscape. To address this, we have
built a cognitive platform with capabilities adopted for this domain. Further,
we have built a general purpose question answering system leveraging the
platform that can be instantiated for multiple products, technologies in the
support domain. The system uses a novel hybrid answering model that
orchestrates across a deep learning classifier, a knowledge graph based context
disambiguation module and a sophisticated bag-of-words search system. This
orchestration performs context switching for a provided question and also does
a smooth hand-off of the question to a human expert if none of the automated
techniques can provide a confident answer. This system has been deployed across
675 internal enterprise IT support and maintenance projects.Comment: To appear in IAAI 201
Biomedical Named Entity Recognition: A Review
Biomedical Named Entity Recognition (BNER) is the task of identifying biomedical instances such as chemical compounds, genes, proteins, viruses, disorders, DNAs and RNAs. The key challenge behind BNER lies on the methods that would be used for extracting such entities. Most of the methods used for BNER were relying on Supervised Machine Learning (SML) techniques. In SML techniques, the features play an essential role in terms of improving the effectiveness of the recognition process. Features can be identified as a set of discriminating and distinguishing characteristics that have the ability to indicate the occurrence of an entity. In this manner, the features should be able to generalize which means to discriminate the entities correctly even on new and unseen samples. Several studies have tackled the role of feature in terms of identifying named entities. However, with the surge of biomedical researches, there is a vital demand to explore biomedical features. This paper aims to accommodate a review study on the features that could be used for BNER in which various types of features will be examined including morphological features, dictionary-based features, lexical features and distance-based features
Recognition of protein/gene names from text using an ensemble of classifiers
This paper proposes an ensemble of classifiers for biomedical name recognition in which three classifiers, one Support Vector Machine and two discriminative Hidden Markov Models, are combined effectively using a simple majority voting strategy. In addition, we incorporate three post-processing modules, including an abbreviation resolution module, a protein/gene name refinement module and a simple dictionary matching module, into the system to further improve the performance. Evaluation shows that our system achieves the best performance from among 10 systems with a balanced F-measure of 82.58 on the closed evaluation of the BioCreative protein/gene name recognitiontask (Task 1A)
- …