24,120 research outputs found
Sparse kernel density estimation technique based on zero-norm constraint
A sparse kernel density estimator is derived based on the zero-norm constraint, in which the zero-norm of the kernel weights is incorporated to enhance model sparsity. The classical Parzen window estimate is adopted as the desired response for density estimation, and an approximate function of the zero-norm is used for achieving mathemtical tractability and algorithmic efficiency. Under the mild condition of the positive definite design matrix, the kernel weights of the proposed density estimator based on the zero-norm approximation can be obtained using the multiplicative nonnegative quadratic programming algorithm. Using the -optimality based selection algorithm as the preprocessing to select a small significant subset design matrix, the proposed zero-norm based approach offers an effective means for constructing very sparse kernel density estimates with excellent generalisation performance
Representation of Functional Data in Neural Networks
Functional Data Analysis (FDA) is an extension of traditional data analysis
to functional data, for example spectra, temporal series, spatio-temporal
images, gesture recognition data, etc. Functional data are rarely known in
practice; usually a regular or irregular sampling is known. For this reason,
some processing is needed in order to benefit from the smooth character of
functional data in the analysis methods. This paper shows how to extend the
Radial-Basis Function Networks (RBFN) and Multi-Layer Perceptron (MLP) models
to functional data inputs, in particular when the latter are known through
lists of input-output pairs. Various possibilities for functional processing
are discussed, including the projection on smooth bases, Functional Principal
Component Analysis, functional centering and reduction, and the use of
differential operators. It is shown how to incorporate these functional
processing into the RBFN and MLP models. The functional approach is illustrated
on a benchmark of spectrometric data analysis.Comment: Also available online from:
http://www.sciencedirect.com/science/journal/0925231
Modeling association between DNA copy number and gene expression with constrained piecewise linear regression splines
DNA copy number and mRNA expression are widely used data types in cancer
studies, which combined provide more insight than separately. Whereas in
existing literature the form of the relationship between these two types of
markers is fixed a priori, in this paper we model their association. We employ
piecewise linear regression splines (PLRS), which combine good interpretation
with sufficient flexibility to identify any plausible type of relationship. The
specification of the model leads to estimation and model selection in a
constrained, nonstandard setting. We provide methodology for testing the effect
of DNA on mRNA and choosing the appropriate model. Furthermore, we present a
novel approach to obtain reliable confidence bands for constrained PLRS, which
incorporates model uncertainty. The procedures are applied to colorectal and
breast cancer data. Common assumptions are found to be potentially misleading
for biologically relevant genes. More flexible models may bring more insight in
the interaction between the two markers.Comment: Published in at http://dx.doi.org/10.1214/12-AOAS605 the Annals of
Applied Statistics (http://www.imstat.org/aoas/) by the Institute of
Mathematical Statistics (http://www.imstat.org
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