Background: Rett syndrome (RTT) is a complex neurological disorder that is one of the most frequent causes of mental
retardation in women. A great landmark in research in this field was the discovery of a relationship between the disease and
the presence of mutations in the gene that codes for the methyl-CpG binding protein 2 (MeCP2). Currently, MeCP2 is
thought to act as a transcriptional repressor that couples DNA methylation and transcriptional silencing. The present study
aimed to identify new target genes regulated by Mecp2 in a mouse model of RTT.
Methodology/Principal Findings: We have compared the gene expression profiles of wild type (WT) and Mecp2-null (KO)
mice in three regions of the brain (cortex, midbrain, and cerebellum) by using cDNA microarrays. The results obtained were
confirmed by quantitative real-time PCR. Subsequent chromatin immunoprecipitation assays revealed seven direct target
genes of Mecp2 bound in vivo (Fkbp5, Mobp, Plagl1, Ddc, Mllt2h, Eya2, and S100a9), and three overexpressed genes due to
an indirect effect of a lack of Mecp2 (Irak1, Prodh and Dlk1). The regions bound by Mecp2 were always methylated,
suggesting the involvement of the methyl-CpG binding domain of the protein in the mechanism of interaction.
Conclusions: We identified new genes that are overexpressed in Mecp2-KO mice and are excellent candidate genes for
involvement in various features of the neurological disease. Our results demonstrate new targets of MeCP2 and provide us
with a better understanding of the underlying mechanisms of RTTThis work was supported by the E-Rare (ERA-Net for research programs on rare diseases) (EuroRETT). R.G.U. is funded by the Comunidad de Madrid FPI
Programme. M.E. is an ICREA Research Professo
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