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Web Server for Protein Structure Prediction

By Lukáš Votroubek

Abstract

This work deals with proteins, especially with their structure and kinds of tertiary, or 3D, structure prediction. Tertiary structure prediction is very important for function prediction of this vitally important substance. Bioinformatics do this prediction much more effective and faster, because classical methods of structure prediction directly from molecule are very expensive and slow. On the other hand they are much more exact. Objective of this thesis is to describe tertiary structure prediction methods, describe used tools and possibility of automatic communication with them.  Next objective is describe implementation of server, that will serve to protein engineers for more effective finding of information about tertiary structure from more servers without requesting each of them separately. Results of testing will be described in this work too

Topics: Superfammily; de novo; iPBA; prediction; SAM-T08; Swiss model; terciární struktura; HHPred; Robetta; 3D struktura; tertiary structure; Fugue; PSI-PRED; JSP; LOOPP; 3D-Jigsaw; I-TASSER; ESyPred3D; ab initio; AS2TS; CPH-models; JAVA; Geno3D; Phyre2; homology modeling; predikce;   homologní modelování; threading; 3D structure; RaptorX
Publisher: Vysoké učení technické v Brně. Fakulta informačních technologií
Year: 2013
OAI identifier: oai:invenio.nusl.cz:236225
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