IRF11 regulates positively type I IFN transcription and antiviral response in mandarin fish, Siniperca chuatsi

In vertebrates, a total of eleven interferon (IFN) regulatory factors (IRFs), IRF1 to IRF11 are reported, with the conserved presence of IRF1 to IRF9 in all classes of vertebrates. However, IRF10 has been reported only in fish and birds, and IRF11 seems to be a fish specific IRF member. In this study, IRF11 in mandarin fish Siniperca chuatsi was found upregulated following virus infection, and IRF11 was localized constitutively in nucleus as revealed through immunofluorescence test. The overexpression and/or luciferase reporter assays showed that IRF11 can induce transcriptionally the ISRE activity, and the expression of type I IFNs, IFNc and IFNh, as well as the IFN-stimulated gene, Mx, thus inhibiting the Siniperca chuatsi rhabdovirus (SCRV) replication as indicated in the reduced expression of virus protein genes. It is thus suggested that IRF11 in mandarin fish and probably in other teleost fish can exert its antiviral effect through the upregulation of type I IFNs and ISGs

Reduction in the phytoplankton index of biotic integrity in riverine ecosystems driven by industrial activities, dam construction and mining: A case study in the Ganjiang River, China

Industrial activities, dam construction, and mining are three human activities important for societal and economic development. However, the effects of these activities on phytoplankton communities have been less quantitatively assessed than those on other groups, such as macroinvertebrates, fish, and periphytic algae. In the present study, we selected the Ganjiang River basin, a tributary of the Yangtze River as the representative area to develop a feasible phytoplankton index of biotic integrity (Phyto-IBI) to evaluate the effects of industrial activities, dam construction, and mining on the biotic integrity of riverine ecosystems. The results showed that the three activities greatly altered the abundance and composition of phytoplankton, with a reduction in phytoplankton species quantity and diversity and an increase in abundance. The health status of the Ganjiang River was fair, and the health statuses of industrial areas, dam areas, mining areas, and reference points were poor, poor, fair, and good, respectively. The three activities damaged the biotic integrity of the aquatic system. Moreover, compared to industrial activities and mining, dam construction is more harmful to aquatic systems in the Ganjiang River. The locally weighted regression scatter plot smoother (LOWESS) method showed that an ammonium nitrogen (NH3-N) concentration of 0.65 mg L-1 is the environmental protection threshold for planktonic biotic integrity in the Ganjiang River. This study not only quantitatively assesses phytoplankton responses to industrial activities, dam construction, and mining but also provides guidance regarding the ecological monitoring, assessment and protection of riverine ecosystems

Molecular characterization of a cyprinid fish (Ancherythroculter nigrocauda) TBK1 and its kinase activity in IFN regulation

TANK-binding kinase 1 (TBK1) plays a vital role in activating interferon (IFN) production and positively regulating antiviral response in mammals. Research on more species of fish is necessary to clarify whether the function of fish TBK1 is conserved compared to that in mammals. Here, a cyprinid fish (Ancherythroculter nigrocauda) TBK1 (AnTBK1) was functionally identified and characterized. The full-length open reading frame (ORF) of AnTBK1 consists of 2184 nucleotides encoding 727 amino acids and contains a conserved Serine/Threonine protein kinase catalytic domain (S_TKc) in the N-terminal, similar to TBK1 in other species. The transcripts of AnTBK1 were found in all the tissues evaluated and the cellular distribution indicated that AnTBK1 was localized in the cytoplasm. In terms of functional identification, AnTBK1 induced a variety of IFN promoter activities as well as the expression of downstream IFN-stimulated genes (ISGs). In addition, AnTBK1 interacted with and significantly phosphorylated IFN regulatory factor 3 (IRF3), exhibiting the canonical kinase activity of TBK1. Finally, AnTBK1 presented strong antiviral activity against spring viremia of carp virus (SVCV) infection. Taken together, our research on the features and functions of AnTBK1 demonstrated that AnTBK1 plays a central role in IFN induction against SVCV infection

Reduction in the phytoplankton index of biotic integrity in riverine ecosystems driven by industrial activities, dam construction and mining: A case study in the Ganjiang River, China

Industrial activities, dam construction, and mining are three human activities important for societal and economic development. However, the effects of these activities on phytoplankton communities have been less quantitatively assessed than those on other groups, such as macroinvertebrates, fish, and periphytic algae. In the present study, we selected the Ganjiang River basin, a tributary of the Yangtze River as the representative area to develop a feasible phytoplankton index of biotic integrity (Phyto-IBI) to evaluate the effects of industrial activities, dam construction, and mining on the biotic integrity of riverine ecosystems. The results showed that the three activities greatly altered the abundance and composition of phytoplankton, with a reduction in phytoplankton species quantity and diversity and an increase in abundance. The health status of the Ganjiang River was fair, and the health statuses of industrial areas, dam areas, mining areas, and reference points were poor, poor, fair, and good, respectively. The three activities damaged the biotic integrity of the aquatic system. Moreover, compared to industrial activities and mining, dam construction is more harmful to aquatic systems in the Ganjiang River. The locally weighted regression scatter plot smoother (LOWESS) method showed that an ammonium nitrogen (NH3-N) concentration of 0.65 mg L-1 is the environmental protection threshold for planktonic biotic integrity in the Ganjiang River. This study not only quantitatively assesses phytoplankton responses to industrial activities, dam construction, and mining but also provides guidance regarding the ecological monitoring, assessment and protection of riverine ecosystems

Nitrate removal from low carbon-to-nitrogen ratio wastewater by combining iron-based chemical reduction and autotrophic denitrification

Nitrate removal from low carbon-to-nitrogen ratio (C/N) wastewater has always been a knotty problem due to the deficiency of organics. Here, a novel iron-based chemical reduction and autotrophic denitrification (ICAD) system was developed. ICAD system could maintain average nitrate removal efficiency of 97.2% for 131 days with feeding 20.3 mg NO3--N/L at hydraulic retention time (HRT) of 24 h. The optimal operational conditions was further explored, and results demonstrated that average nitrate removal efficiency of 85.5% and 98.4% could be achieved at HRT of 12 h and 24 h (influent 20.3 mg NO3--N/L), while average nitrate removal efficiency could reach 96.3% at optimal HRT of 12 h (influent 10.3 mg NO3--N/L). Hydrogenophaga, which can carry out hydrogenotrophic denitrification, showed a positive correlation with nitrate removal efficiency of the ICAD system. Low cost and simple operation make the ICAD system suitable for large-scale application.</p

Zebrafish prmt7 negatively regulates antiviral responses by suppressing the retinoic acid-inducible gene-I-like receptor signaling

Arginine methylation is a post-translational modification in histone and nonhistone proteins that can affect numerous cellular activities. Protein arginine methyltransferase 7 (Prmt7), a type III arginine methyltransferase, catalyzes the formation of stable monomethylarginines of histones. The role of PRMT7 in virus-induced innate immunity signaling, however, remains largely unknown. We demonstrate that zebrafish prmt7 could be inhibited by spring viremia of carp virus (SVCV) and grass carp reovirus (GCRV) infection. The overexpression of prmt7 suppresses cellular antiviral responses that are partially dependent on the arginine methyltransferase activity of prmt7. Consistently, prmt7-null zebrafish were more resistant to SVCV or GCRV infection, exhibiting enhanced expression of key antiviral genes and fewer necrotic cells in the liver and kidney upon viral infection. Furthermore, we established a zebrafish model to investigate grass carp hemorrhagic disease. Our findings suggest that by suppressing the RIG-I-like receptors signaling, zebrafish prmt7 negatively regulates antiviral responses, indicating the vital role of prmt7 and its arginine methyltransferase activity in innate immunity

Responses of the macroinvertebrate taxonomic distinctness indices of lake fauna to human disturbances in the middle and lower reaches of the Yangtze river

In recent decades, floodplain lakes have been among the most endangered ecosystems in the world due to human activities, and they are experiencing severe degradation in ecological function and declines in biodiversity. Previous studies have mostly concentrated on the effects of human disturbances on the traditional taxonomic structure of aquatic communities, but little is known about the responses of other facets of biodiversity measures (e.g., phylogenetic relatedness) to anthropogenic impacts. Here, we examined the effectiveness of species richness and taxonomic distinctness (TD) indices (the average taxonomic distinctness, Delta(+), and variation in taxonomic distinctness, Lambda(+)) in determining anthropogenic effects based on four datasets of macroinvertebrate communities in 31 shallow lakes in the Yangtze floodplain. The species composition and number of entire taxa and three subsets (mollusk-, insect- and oligochaete-only taxa) were all significantly different among the five lake groups, with the highest species richness in the river-connected lakes, followed by the oxbow, macrophytic, macrophytic-algal transition and algal lakes. For the TD indices, only the Lambda(+) of entire taxa showed clear differences among lake groups, with the highest values in the algal lakes and the lowest values in the river-connected lakes. However, the TD indices based on the other three datasets showed no differences and did not clearly reveal the degree of anthropogenic disturbances as we expected. However, the spatial pattern of species richness was largely influenced by lake area rather than by water quality. In contrast, the TD indices were insensitive to lake area and responded more readily to water quality than species richness. We proposed that the TD indices provided a useful complement to traditional diversity indices (e.g., species richness) and could be considered as a potential bioassessment metric for detecting the environmental degradation level of freshwater lakes

Construction of a high-density genetic map and mapping of growth related QTLs in the grass carp (Ctenopharyngodon idellus)

AbstractBackgroundGrass carp (Ctenopharyngodon idellus) are important species in Asian aquaculture. A draft genome for grass carp has already been published in 2015. However, there is still a requirement for a suitable genetic linkage map to arrange scaffolds on chromosomal frameworks. QTL analysis is a powerful tool to detect key locations for quantitative traits, especially in aquaculture. There no growth related QTLs of grass carp have been published yet. Even the growth trait is one of the focuses in grass carp culture.ResultsIn this study, a pair of distantly related parent grass carps and their 100 six-month-old full-sib offspring were used to construct a high-density genetic map with 6429 single nucleotide polymorphisms (SNPs) by 2b-RAD technology. The total length of the consensus map is 5553.43?cM with the average marker interval of 1.92?cM. The map has a good collinearity with both the grass carp draft genome and the zebrafish genome, and it assembled 89.91% of the draft genome to a chromosomal level. Additionally, according to the growth-related traits of progenies, 30 quantitative trait loci (QTLs), including 7 for body weight, 9 for body length, 5 for body height and 9 for total length, were identified in 16 locations on 5 linkage groups. The phenotypic variance explained for these QTLs varies from 13.4 to 21.6%. Finally, 17 genes located in these regions were considered to be growth-related because they either had functional mutations predicted from the resequencing data of the parents.ConclusionA high density genetic linkage map of grass carp was built and it assembled the draft genome to a chromosomal level. Thirty growth related QTLs were detected. After the cross analysis of Parents resequencing data, 17 candidate genes were obtained for further researches.</p

Modeling the Ecological Response of a Temporarily Summer-Stratified Lake to Extreme Heatwaves

Climate extremes, which are steadily increasing in frequency, can have detrimental consequences for lake ecosystems. We used a state-of-the-art, one-dimensional, hydrodynamic-ecosystem model [General Ocean Turbulence Model (GOTM)-framework for aquatic biogeochemical models (FABM)-PCLake] to determine the influence of extreme climate events on a temperate and temporarily summer stratified lake (Lake Bryrup, Denmark). The model was calibrated (eight years data) and validated (two years data), and the modeled variables generally showed good agreement with observations. Then, a span of extreme warming scenarios was designed based on weather data from the heatwave seen over northern Europe in May-July 2018, mimicking situations of extreme warming returning every year, every three years, and every five years in summer and all year round, respectively. We found only modest impacts of the extreme climate events on nutrient levels, which in some scenarios decreased slightly when looking at the annual mean. The most significant impacts were found for phytoplankton, where summer average chlorophyll a concentrations and cyanobacteria biomass peaks were up to 39% and 58% higher than during baseline, respectively. As a result, the phytoplankton to nutrient ratios increased during the heat wave experiments, reflecting an increased productivity and an increased cycling of nutrients in the pelagic. The phytoplankton blooms occurred up to 15 days earlier and lasted for up to half a month longer during heat wave years relative to the baseline. Our extreme scenarios illustrated and quantified the large impacts of a past heat wave (observed 2018) and may be indicative of the future for many temperate lakes

Synergistic toxicity of microcystin-LR and Cu to zebrafish (Danio rerio)

Toxic cyanobacterial blooms often coincide with metal pollution in a freshwater environment because of surface run-off enriched with nutrients and metals. However, the joint toxic effects of cyanobacterial toxins and metals on aquatic animals remain unknown. In this study, single and joint toxic effects and mechanisms of microcystinLR (MCLR) and copper (Cu) were investigated in the early development of zebrafish (Danio rerio). The LC50(72)(-h) values were 2.79 mg/L for MCLR and 3.23 mg/L for Cu. The sublethal concentrations of MCLR (<= 600 mu g/L) did not affect the normal development of zebrafish but increased its hatchability. Strong synergistic toxic effects were observed after co-exposure to MCLR and Cu at environmental concentrations (<= 60 mu g/L). The synergistic toxic effects of these two compounds could be attributed to the increased bioaccumulation of MCLR and Cu, which was mediated by MCLR transporters (e.g., oatp1d1 and oatp2b1) and Cu transporters (e.g., ctr1 and atp7a), in zebrafish. Such bioaccumulation caused oxidative stress, as suggested by the disrupted gene expression of anti-oxidative enzymes (e.g., Cu/Zn-SOD, Mn-SOD, and CAT). Our results revealed for the first time the synergistic toxic effects and potential toxic mechanism of MCLR-Cu in aquatic animals. These synergistic effects should be considered when assessing the ecological risk of toxic cyanobacterial blooms. (C) 2019 Published by Elsevier B.V