Aquatic systems are an important but poorly constrained source of methane (CH4) to the atmosphere. The coastal ocean in particular has been insufficiently represented in global methane budgets and assessments like the IPCC 5th report. Here, we present a combination of revised and new global methane emissions from freshwater systems including rivers and streams, lakes and reservoirs, freshwater aquaculture ponds; brackish systems including inner estuaries, coastal vegetated wetlands (mangroves, salt-marshes, seagrasses), coastal aquaculture ponds; and marine systems including continental shelves, in comparison to previous estimates of methane emissions from the open ocean, freshwater wetlands, and rice paddies. We find that human impacted sites have higher emissions than more natural ones. We also assess the main factors controlling methane emissions in different aquatic systems, as well as identifying drivers that may become increasingly important under global change