Development of tools to explore the fundamentals of axonemal dynein heavy chain biology and improve the efficiency of genome editing

Abstract

Motile cilia are microtubule based projections that assist in the movement of fluid over the surface of cells, such as in the respiratory epithelium, or of cells through a fluid, such as in sperm. Ciliary movement is driven by axonemal dyneins (ADs), large molecular complexes which contain long heavy chain ATPase motor subunits. The stability of ADs has been shown to be dependent on multiple cytoplasmically localised proteins, which are involved in their assembly and trafficking to the cilia. The heavy chain subunits have been suggested to be particularly reliant on specialised chaperoning pathways in order to fold into the correct tertiary structure. Hereditary defects in genes encoding the proteins of the ADs or proteins involved in their assembly result in an incurable human disease, primary ciliary dyskinesia (PCD). PCD results in neonatal respiratory distress with lifelong respiratory complications and is also highly heterogenous with mutations in 40 genes associated with it so far. Despite the identification of many putative assembly factors, where and how they interact with AD proteins remains unknown. In order to investigate AD complexes, from the translation of their subunits to their degradation, in greater spatial and temporal detail a heavy chain outer dynein arm subunit (ODA), Dnah5, was tagged with the adaptable SNAP tag in mice. Dnah5 is the largest AD heavy chain and the most commonly mutated gene in PCD. When developing novel therapeutics the SNAP-Dnah5 mouse could be used as a reporter for functional rescue in PCD mouse models which exhibit loss of these complexes from the cilia. The effectiveness of the therapy could then be graded on the restoration of SNAP-DNAH5 fluorescence in the motile cilia. As a secondary aim this project also sought to improve the efficiency of CRISPR/Cas9 induced gene correction, via a novel linkage method, to develop a genome editing therapy for PCD, which could be tested using SNAP-Dnah5 mice. Using the SNAP-Dnah5 mouse tracheal epithelial cells I have directly imaged DNAH5’s docking onto the motile axoneme from the distal end and have demonstrated that there is a very low level of ODA turnover in mature cilia. I have also shown that the Dnah5 transcript localises to large apical clusters in ciliated tracheal epithelial cells and via preliminary pulldown experiments that SNAPDNAH5 might interact with RNA regulatory proteins in maturing motile ciliated cells suggestive of translational regulation. This project demonstrates the utility of this mouse model for future studies

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