Introduction: This study reports the pediatric epidemiology of respiratory syncytial virus (RSV), infl uenza (IF), parainfl uenza (PIV), and adenovirus (ADV) at Hospital de Clínicas de Porto Alegre. Methods: Cases of infection, hospitalizations in intensive care units (ICUs), nosocomial infections, and lethality rates were collected from 2007 to 2010. Results: RSV accounted for most nosocomial infections. Intensive care units admission rates for ADV and RSV infections were highest in 2007 and 2010. During 2008-2009, H1N1 and ADV had the highest ICU admission rates. ADV had the highest fatality rate during 2007-2009. Conclusions: Each virus exhibited distinct behavior, causing hospitalization, outbreaks, or lethality

Barth, Afonso Luis

Beck, Caroline

Kuchenbecker, Ricardo de Souza

Paris, Fernanda de

Pires, Márcia Rosane

Santos, Rodrigo Pires dos

Revista da Sociedade Brasileira de Medicina Tropical

English

Lume 5.8

  223Case ReportShort CommunicationRevista da Sociedade Brasileira de Medicina Tropical 47(2):223-226, Mar-Apr, 2014http://dx.doi.org/10.1590/0037-8682-0080-2013Address to: Dra Fernanda de-Paris. Laboratório de Biologia Molecular/Unidade de Pesquisa Biomédica/HCPA. Rua Ramiro Barcelos 2350/2º andar, 90035-903 Porto Alegre, RS, Brasil.Phone: 55 51 3359-8860; Fax 55 51 3359-8310. e-mail: fparis@hcpa.ufrgs.br; fparis@terra.com.brReceived 23 April 2013Accepted 27 August 2013Viral epidemiology of respiratory infections among children at a tertiary hospital in Southern BrazilFernanda de-Paris[1],[2], Caroline Beck[3], Márcia Rosane Pires[4], Rodrigo Pires dos Santos[4], Ricardo de Souza Kuchenbecker[3] and Afonso Luis Barth[1],[2][1]. Serviço de Patologia Clínica, Laboratório de Biologia Molecular, Unidade de Pesquisa Biomédica, Hospital de Clínicas de Porto Alegre, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS. [2]. Programa de Pós-Graduação em Ciências Médicas, Faculdade de Medicina, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS. [3]. Programa de Pós-Graduação em Epidemiologia, Instituto de Avaliação de Tecnologia em Saúde, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS. [4]. Comissão de Controle de Infecção Hospitalar, Hospital de Clínicas de Porto Alegre, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS.ABSTRACTIntroduction: This study reports the pediatric epidemiology of respiratory syncytial virus (RSV), infl uenza (IF), parainfl uenza (PIV), and adenovirus (ADV) at Hospital de Clínicas de Porto Alegre. Methods: Cases of infection, hospitalizations in intensive care units (ICUs), nosocomial infections, and lethality rates were collected from 2007 to 2010. Results: RSV accounted for most nosocomial infections. Intensive care units admission rates for ADV and RSV infections were highest in 2007 and 2010. During 2008-2009, H1N1 and ADV had the highest ICU admission rates. ADV had the highest fatality rate during 2007-2009. Conclusions: Each virus exhibited distinct behavior, causing hospitalization, outbreaks, or lethality.Keywords: Respiratory viruses. Pediatric patients. Infl uenza A (H1N1) virus.Respiratory tract infections (RTIs) are a major cause of morbidity and mortality in children worldwide1. According to World Health Organization data, RTIs account for the deaths of approximately 4 million children per year. Two-thirds of these deaths occur in infants during the fi rst year of life, and 90% occur in developing countries. Viruses are the most common causative agents of RTIs and are responsible for a substantial percentage of childhood mortality2. Traditionally, the most widely researched viruses implicated in RTIs include human respiratory syncytial virus (RSV), rhinovirus (RHV), infl uenza (IF), parainfl uenza viruses (PIV), and adenovirus (ADV)3. These viruses circulate within the community and cause many hospitalizations. Viral respiratory nosocomial infections are also observed throughout the year. Increased hospitalization rates and nosocomial outbreaks can create a major fi nancial burden4.The importance of respiratory virus surveillance has grown over the last 10 years because of the unexpected emergence of several new respiratory viruses, including infl uenza A (H5N1), severe acute respiratory syndrome (SARS) coronavirus, coronavirus NL63, human bocavirus, and infl uenza A virus (H1N1)5. Furthermore, the seasonality of some respiratory viruses is well established, and viral surveillance and laboratory-based diagnostics play an important role in guiding the timing of prophylaxis and other interventions. However, this seasonality may be variable. In temperate regions, for instance, viral infections tend to peak in the late fall and winter, whereas in tropical regions, they occur over extended periods associated with the rainy season6. In Brazil, a continental country that is host to many different climates, regional surveillance studies on viral patterns play an essential role in the planning of prophylaxis programs and other interventions. Thus, this study aimed to report the epidemiology of major respiratory viruses (RSV, IF, PIV, and ADV) among pediatric patients who were treated at Hospital de Clínicas de Porto Alegre (HCPA) between 2007 and 2010, including data on the 2009 infl uenza A (H1N1) pandemic.Porto Alegre is the capital of the Brazilian State Rio Grande do Sul, which is located at 10m above mean sea level, latitude 30.01 S, and longitude 51.13 W. It has a mean annual temperature of 19°C and an area of 497km² with a population of approximately 1.5 million. Hospital de Clínicas de Porto Alegre is a university-affi liated tertiary referral hospital with over 800 beds that serves the population of Porto Alegre and its metropolitan region. This study followed an observational design, and the data on all variables were collected from children (age 0-12 years) who were treated at HCPA between 2007 and 2010 (retrospective study). We obtained the number of cases of respiratory infection attributable to each viral agent of interest, the number of patients admitted to general wards and intensive care units (ICUs), the number of nosocomial infections, and lethality rates. The study protocol was approved by the HCPA Research Ethics Committee.The laboratory detection of viruses (RSV, ADV, IF, and PIV) in nasopharyngeal aspirates was performed with an indirect immunofl uorescence (IIF) assay using commercially 224de-Paris F et al - Respiratory viruses in Southern BrazilTABLE 1 - Number of confi rmed cases by virus, rate of admission to general wards and admission to intensive care unit.Human respiratory syncytial virus 2007 2008 2009 2010Human Adenovirus    N 14 12 14 18A 8 10 9 14% 57.1 83.3 64.3 77.8ICU 2 2 2 2% 14.3 16.6 14.3 11.1Infl uenza virus    N 25 20 105 6A 5 11 50 4% 20.0 55.0 47.6 66.7ICU 2 4 5 0% 8.0 20.0 4.8 0.0Infl uenza A (H1N1) virus    N - - 28 -A - - 18 -% - - 64.3 -ICU - - 7 -% - - 25.0 -Parainfl uenza viruses    N 68 136 105 98A 23 34 67 60% 33.8 25 63.8 61.2ICU 5 7 5 2% 7.3 5.1 4.8 2.0Human respiratory syncytial virus    N 201 296 264 307A 119 168 157 259% 59.2 56.7 59.5 84.4ICU 32 38 25 33% 15.9 12.8 9.5 10.7N: number of confi rmed cases by each virus; A: number of cases with admission to general wards by each virus; ICU: number of cases with admission to intensive care unit. available monoclonal antibodies (Medivax, Dublin, Ireland). Infl uenza A (H1N1) was detected using real-time polymerase chain reaction (PCR) as per the Centers for Disease Control and Prevention (CDC) protocol7. This assay was performed in Brazilian reference laboratories.The number of IIF-confi rmed cases of infection with each respiratory virus of interest (RSV, IF, PIV, and ADV) was obtained from HCPA Infection Control Committee reports, as was the number of hospitalizations in general wards and ICUs. The criteria for nosocomial infection included the absence of respiratory symptoms at the time of admission and the detection of a respiratory virus within 7 days after admission8. Nosocomial infection rates were calculated as the percentage of nosocomial infections attributable to each virus divided by the total number of nosocomial infections attributable to all viruses x 100.The number of deaths due to viral respiratory tract infection was obtained, and the case lethality rates for each virus were calculated. Case lethality was calculated using the formula number of deaths/number of cases x 100. All results were obtained by descriptive analysis.Approximately 12,160 pediatric patients were treated per year at the HCPA Emergency Department. The Emergency Department is the point of entry for the majority of patients treated at HCPA. The number of patients treated and the number of suspected and confi rmed cases of viral RTIs (due to RSV, IF, PIV, and ADV) followed an upward trend during the winter months (June to August) of each year (Figure 1).The number of confi rmed cases stratifi ed by virus and severity (admission to general wards or ICUs) is shown in Table 1. This table shows that RSV and ADV were responsible for the highest rates of ICU admission in 2007 and 2010, whereas H1N1 and ADV accounted for the highest rates of ICU admission in 2008 and 2009.Table 2 shows that RSV was responsible for the highest rates of nosocomial infection throughout the study period (81.5%, 61%, 37.7%, and 53.5% in 2007 through 2010, respectively).The case fatality rates observed in 2007 through 2010, respectively, were as follows: ADV = 7.1%, 16.7%, 7.1%, and 0%; IF = 0%, 5%, 4.7%, and 0%; PIV = 0%, 1.5%, 0.9%, and 0%; and RSV = 1.5%, 1.4%, 1.5%, and 2.3%. In 2009, the case fatality rate for H1N1 was 7.1%. ADV had the highest case fatality rates. In 2009, the case fatality rate of H1N1 was similar to that of ADV.In temperate regions, the rates of viral infection generally tend to increase in the late fall and winter, whereas in tropical regions, this increase occurs over extended periods associated with the rainy season6. In our study, conducted in Porto Alegre, we observed a trend toward increases in the number of confi rmed cases of viral infection in the winter months (June to August) of each year (Figure 1). A substantial number of RSV and infl uenza cases occurred in these months. These viruses, particularly RSV, are highly prevalent among children (Table 1). Consequently, annual RSV outbreaks lead to increased presentation of children to the HCPA Emergency Department. The frequency and severity of RSV infections in this age group appear to be a consequence of complex and multifactorial events, mainly involving immunological factors9. Palivizumab, a humanized monoclonal antibody, is currently recommended as prophylaxis for certain patient groups at risk of severe RSV infection4.   225Rev Soc Bras Med Trop 47(2):223-226, Mar-Apr, 2014TABLE 2 - Rates of nosocomial infection by respiratory viruses (ADV, IF, H1N1, PIV and RSV) in each year (2007-2010).                                       Nosocomial infections*Years ADV (%) IF (%) H1N1 (%) PIV (%) RSV (%)2007 11.0 0.0 0.0 7.0 81.52008 12.0 2.0 0.0 24.5 61.02009 1.4 29.0 4.0 27.5 37.72010 4.6 2.0 0.0 39.5 53.5ADV: human adenovirus; IF: infl uenza virus; H1N1: infl uenza A (H1N1) virus; PIV: parainfl uenza viruses; RSV: human respiratory syncytial virus. *nosocomial infection rates were calculated as the percentage of nosocomial infections caused by each virus/total number of viral nosocomial infections x 100.Despite its proven efficacy in reducing hospitalizations attributable to RSV, palivizumab is still exceedingly expensive for developing countries such as Brazil. Therefore, reducing costs through the optimization of drug administration may allow more children to benefi t from RSV prophylaxis10.Concerning nosocomial infections, RSV is the foremost cause of hospital-acquired respiratory infections among children8. The rates of hospital-acquired RSV infection 9828641.1581.1131.4351.0291.1409681.080 97194489602004006008001,0001,2001,4001,600020406080100120140160Number of patientsseenattheemergencydept.Number of patientsseenattheemergencydept.Number ofpatientsseenattheemergencydept.Numberofpatientsseenattheemergencydept.Number suspicious/confirmedcasesN of children with suspicion of viral infectionumberNumber of confirmed casesNumber of patients seen at emergency dept.8087098737479011.0891.27787870963996890702004006008001,0001,2001,400050100150200250Number suspicious/confirmedc asesNumber of children with suspicion of viral infectionNumber of confirmed casesNumber of patients seen at emergency dept.8135718067729261.1111.5621.2429461.137 1.1381.00302004006008001,0001,2001,4001,6001,800050100150200250300Number suspicious/confirmedcases Number of children with suspicion of viral infectionNumber of confirmed casesNumber of patients seen at emergency dept.1.0489881.0591.0861.171 1.2671.1161.3061.1081.2281.1611.00302004006008001,0001,2001,400050100150200250Number suspicious/confirmedcases Number of children with suspicion of viral infectionNumber of confirmed casesNumber of patients seen at emergency dept.FIGURE 1 - Number of patients treated for suspected infection with respiratory virus and confi rmed cases of infection, 2007-2010.observed in this study are consistent with this information (Table 2). However, these rates displayed some variation in each year of the study period, and a decrease occurred in 2009. This downward trend in 2009 may have been associated with the extensive circulation of H1N1 in this period. A similar phenomenon was reported by Mak and co-workers in Hong Kong and is most likely explained by virus interference11.Regarding the severity of respiratory infections, using ICU admission as a surrogate measure, we observed higher rates of ICU admission for RSV and ADV infection in 2007 and 2010, whereas in 2008 and 2009, the highest rates of ICU admission were attributable to H1N1 and ADV (Table 1). Adenovirus infections often lead to severe clinical consequences in hospitalized patients12, and these infections are a matter of great concern to the members of hospital infection control committees. During 2009, H1N1 accounted for a substantial portion of ICU admissions. Libster and colleagues also reported higher hospitalization rates due to H1N1 infection among Argentinean children. In Argentina, the rates of hospitalization for H1N1 were double those for seasonal infl uenza in 200813. We observed a similar increase in hospitalization rates in our sample, demonstrating that the emergence of H1N1 had a major impact on our health system. However, RSV can account for even higher ICU admission rates, as observed in 2007 and 2010 in this study. These variations are most likely associated with circulating RSV genotypes and with the extent of the annual RSV outbreak in each year14.226Our study also assessed the case lethality rates of viral RTIs. Mirroring the severity of respiratory infections as measured by ICU admission, ADV and H1N1 had the highest case fatality rates, as expected. Linch and coworkers reported that ADV disease is more severe, and dissemination more likely, in patients with impaired immunity12. Because of their severe clinical manifestations and ability to start outbreaks, ADV infections are kept under close surveillance in the hospital setting. As for H1N1, this new emergent strain of infl uenza displayed a distinct severity profi le among pediatric patients. Whereas seasonal infl uenza had case lethality rates of approximately 5%, the lethality rate of H1N1 was 7.1%. Other studies have also noted that infl uenza A (H1N1) is associated with substantial pediatric mortality13,15. The important tools for minimizing the severity of infection in children include antiviral therapy, particularly in patients with preexisting neurological disorders or chronic lung disease, and vaccination.There are some limitations to our study. Virus detection (except for H1N1) was evaluated by IIF, which is not a molecular test with increased sensitivity. The IIF assay can display low sensitivity for ADV and IF detection5. Moreover, the lack of data about other respiratory viruses, such as rhinovirus, bocavirus, and metapneumovirus, is a limitation in this study. However, this study profi led important respiratory viruses in the capital of the Brazilian State of Rio Grande do Sul, including data on the H1N1 pandemic.In summary, each respiratory virus can display a distinct pattern of behavior, causing hospitalization, nosocomial outbreaks, or even mortality in children. Monitoring and surveillance of well-known respiratory viruses and unexpected emerging threats play an important role in guiding management and minimizing the impact on the community. Consequently, viral surveillance studies are important to guide the timing of prophylaxis and other interve ntions. Surveillance of RSV peaks, for example, helps track RSV seasonality and thus supports planning of prophylaxis for vulnerable children. Adequate surveillance of infl uenza plays a major role in the design of appropriate vaccines, the planning of prophylaxis schedules, and the detection of novel viruses. Thus, respiratory illness surveillance strategies can reduce healthcare costs, morbidity, and mortality.The authors declare that there is no confl ict of interest.CONFLICT OF INTERESTFINANCIAL SUPPORTFundo de Incentivo à Pesquisa e Ensino do Hospital de Clínicas de Porto Alegre (FIPE/HCPA), Fundação de Amparo à Pesquisa do Estado do Rio Grande do Sul (FAPERGS) and Conselho Nacional de Desenvolvimento Científi co e Tecnológico (CNPq).REFERENCES1. World Health Organization/United Nations (WHO/UN) Children’s Fund. Global action plan for prevention and control of pneumonia (GAPP). Geneva: World Health Organization and the United Nations Children’s Fund, November 2009.2. Cabello C, Manjarrez M, Olvera R, Villalba J, Valle L, Paramo I. Frequency of viruses associated with acute respiratory infections in children younger than fi ve years of age at a locality of Mexico City. Mem Inst Oswaldo Cruz 2006; 10:21-24.3. Olofsson S, Brittain-Long R, Andersson LM, Westin J, Lindh M. PCR for detection of respiratory viruses: seasonal variations of virus infections. Expert Rev Anti Infect Ther 2011; 9:615-626.4. O' Connell K, Boo TW, Keady D, Niriain U, O' Donovan D, Commane M, et al. Use of Palivizumab and infection control measures to control an outbreak of respiratory syncytial virus in neonatal intensive care unit confi rmed by real-time polymerase chain reaction. J Hosp Infect 2011; 77:338-342.5. Pilger DA, Cantarelli VV, Amantea SL, Leistner-Segal S. Detection of human bocavirus and human metapneumovirus by real-time PCR from patients with respiratory symptoms in Southern Brazil. Mem Inst Oswaldo Cruz 2011; 106:56-60.6. Murray EL, Klein M, Brondi L, McGowan Jr JE, van Mels C, Brooks WA, et al. Rainfall, household crowding, and acute respiratory infections in the tropics. Epidemiol Infect 2012; 140:78-86.7. World Health Organization. CDC protocol of real time RT-PCR for swine infl uenza A (H1N1). Atlanta: WHO, 2009.8. Mlinaric-Galinovic G, Varda-Brkic D. Nosocomial respiratory syncytial virus infections in children’s wards. Diagn Microbiol Infect Dis 2000; 37:237-246.9. Tregoning JS, Schwarze J. Respiratory viral infections in infants: causes, clinical symptoms, virology, and immunology. Clin Microbiol Rev 2010; 23:74-98.10. Weckx LY, Fernandes MM, Monteiro AI, Souza AR, Moraes-Pinto MI. Optimization strategy to minimize wastage of palivizumab during the 2008 RSV season in São Paulo, Brazil. J Trop Pediatr 2009; 55:341-342.11. Mak GC, Wong AH, Ho WY, Lim W. The impact of pandemic infl uenza A (H1N1) 2009 the circulation of respiratory viruses 2009 - 2011. Infl uenza Other Resp Viruses 2012; 6:6-10.12. Lynch JP, Fishbein M, Echavarria M. Adenovirus. Semin Respir Crit Care Med 2011; 32:494-511.13. Libster R, Bugna J, Coviello S, Hijano DR, Dunaiewsky M, Reynoso N, et al. Pediatric hospitalizations associated with 2009 pandemic infl uenza A (H1N1) in Argentina. N Engl J Med 2010; 362:45-55.14. Yamaguchi M, Sano Y, Dapat IC, Saito R, Suzuki Y, Kumaki A, et al. High Frequency of Repeated Infections Due to Emerging Genotypes of Human Respiratory Syncytial Viruses among Children during Eight Successive Epidemic Seasons in Japan. J Clin Microbiol 2011; 49:1034-1040.15. Moretti ML, Sinkoc V, Cardoso LG, Camargo GJ, Bachur LF, Hofl ing CC, et al. Lessons from the epidemiological surveillance program, during the infl uenza A (H1N1) virus epidemic, in a reference university hospital of Southeastern Brazil. Rev Soc Bras Med Trop 2011; 44:405-411.de-Paris F et al - Respiratory viruses in Southern Brazil

Viral epidemiology of respiratory infections among children at a tertiary hospital in Southern Brazil

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Viral epidemiology of respiratory infections among children at a tertiary hospital in Southern Brazil

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