This is a part of our joint program. The purpose of this paper is to study
smooth toroidal compactifications of Siegel varieties and their applications,
we also try to understand the K\"ahler-Einstein metrics on Siegel varieties
through the compactifications. Let Ag,Γ:=Hg/Γ be a Siegel
variety, where Hg is the genus-g Siegel space and Γ is an
arithmetic subgroup in Aut(Hg). There are four aspects of this paper :
1.There is a correspondence between the category of degenerations of Abelian
varieties and the category of limits of weight one Hodge structures. We show
that any cusp of Siegel space Hg can be identified with the set of
certain weight one polarized mixed Hodge structures. 2.In general, the boundary
of a smooth toroidal compactification Aˉg,Γ of Ag,Γ
has self-intersections.For most geometric applications, we would like to have a
nice toroidal compactification such that the added infinity boundary D∞=Aˉg,Γ−Ag,Γ is a normal crossing divisor, We actually
obtain a sufficient and necessary combinatorial condition for toroidal
compactifications. 3. A toroidal compactification Aˉg,Γ of is
totally determined by a combinatorial condition : an admissible family of
polyhedral decompositions of certain positive cones. We show that the unique
K\"ahler-Einstein metric on Ag,Γ endows some restraint combinatorial
conditions for all toroidal smooth compactifications of Ag,Γ. 4.We
study the asymptotic behaviour of logarithmical canonical line bundles on
smooth toroidal compactifications of Ag,Γ and get an integral formula
for intersection numbers.Comment: To appear in American Journal of Mathematics 2014,81 page