In previous work, we have commenced the task of unpacking the 473 800 776 reflexive polyhedra by Kreuzer and Skarke into a database of Calabi-Yau threefolds [R. Altman et al. J. High Energy Phys. 02 (2015) 158.] (see www.rossealtman.com). In this paper, following a pedagogical introduction, we present a new algorithm to isolate Swiss cheese solutions characterized by “holes,” or small 4-cycles, descending from the toric divisors inherent to the original four dimensional reflexive polyhedra. Implementing these methods, we find 2268 explicit Swiss cheese manifolds, over half of which have h1,1=6. Many of our solutions have multiple large cycles. Such Swiss cheese geometries facilitate moduli stabilization in string compactifications and provide flat directions for cosmological inflation