We present results from a semicoherent search for continuous gravitational
waves from the low-mass X-ray binary Scorpius X-1, using a hidden Markov model
(HMM) to track spin wandering. This search improves on previous HMM-based
searches of LIGO data by using an improved frequency domain matched filter, the
J-statistic, and by analysing data from Advanced LIGO's second
observing run. In the frequency range searched, from 60 to
650Hz, we find no evidence of gravitational radiation. At
194.6Hz, the most sensitive search frequency, we report an upper
limit on gravitational wave strain (at 95\% confidence) of h095%=3.47×10−25 when marginalising over source inclination angle. This is the
most sensitive search for Scorpius X-1, to date, that is specifically designed
to be robust in the presence of spin wandering