The alignment results from100 randomly selected conserved core eukaryotic genes (CEGs) among Arabidopsis thaliana, P. equestris and eleven transcriptomes for examining the transcript assemblies completeness. 82CEGs sequences (82%) were perfectly reconstructed, showing high consistency, although there were some sequences suggesting that partial sequencing missed in PEQU genome, such as sequences from At2g36880.1 and At1g12840.1 homologous genes, and some sequences in transcriptomes should be merged, such as sequences from At4g39280.1 homologous genes
