Transgenic V. vinifera 'Brachetto' plants expressing Vitreoscilla stercoraria haemoglobin gene (vhb) were obtained by transferring the pBI-VHb construct harbouring the vhb and the nptII genes, via A. tumefaciens EAH 105. From 18 distinct transgenic plantlets, 2 lines were randomly chosen and 11 and 14 plants respectively obtained by micropropagation were acclimated for 100 days in the greenhouse, together with 10 micropropagated plants of a wild-type control line. A data-driven assessment, aimed at evaluating all measurable lowmolecular weight organic compounds in these transgenic plants was performed using UPLC-Q-TOF with an ESI interface. Comparisons between controls and transgenic lines and between the two transgenic lines detected significant differences in some metabolic patterns. For each line, a list of identified compounds was extracted from the 100 most significant biomarkers