Raw Illumina data files for the Illumina Miseq sequencing of a library of tagged specimens of Microgastrinae (Hymenoptera: Braconidae) for COI (in two amplicons), Wingless and ITS2. This file contains Extraction codes E551-E650. Sample information for all specimens can be found as supporting information at: https://onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.12904 . The original data was generated for the paper: Fagan-Jeffries, E.P., Cooper, S.J.B., Bertozzi, T., Bradford, T.M. & Austin, A.D. (2018) DNA barcoding of microgastrine parasitoid wasps (Hymenoptera: Braconidae) using high-throughput methods more than doubles the number of species known for Australia. Molecular Ecology Resources 18, 1132β1143