Waterlogging, caused by flooding, excessive rains and poor drainage is a serious abiotic stress determining crop productivity worldwide. Maize (Zea mays L) is a basic food grain in many areas and several cultures and is culti- vated under much diverse agro-climatic zones extending from subtropical to cooler temperate regions. Therefore, the crop remains open to varied types of biotic as well as abiotic stresses. Among various abiotic stresses, water- logging is one of the most important constraints for maize production and productivity. Breeding for improved wa- terlogging tolerance includes modification of plant morphology, use of tolerant secondary traits and development of resistant varieties through conventional breeding and biotechnological approaches. A successful programme in conventional breeding should involve the integration of several criteria into one selection index and also successful breeding programmes for improved tolerance to submergence stress frequently combine two or more breeding strategies. Marker assisted selection (MAS) is an effective approach to identify genomic regions of crops under stress and construction of molecular linkage maps enable carry out pyramiding of desirable traits to improve sub- mergence tolerance through MAS