The socio-economic and 'natural' systems are, to a variable extent, now locked in a co-evolutionary path, characterized by a joint determinism and complex feedback effects. The management of the coastal zones, including also modeling and assessment measures, should, be reoriented over time to properly capture the causes and consequences of the joint system changes as manifested in the coastal areas. This will require a collaborative work among a range of economical, environmental and social science disciplines. The pressures and the high instability are similar between the coast and the sea, in both senses (from the land to the sea and also from the sea to the land), being given by various factors as the strong winds, waves, storms, open sea, currents, as well well also the variability of temperatures, salinity, density, due to the Danube impact, etc. The influence of the rivers discharging into the Black Sea is important, while the coastal erosion, flooding, urbanization, tourism, naval industry have an impact on the coast and the sea environment. The Marine Spatial Planning Directive is appropriate in Romania to put in practice the similar tools, and practical approach from the coast to the maritime space. This paper aims to represent an useful starting point in the management of the coastal zones for both natural and social science research that would be seeked (by a more integrated modelling and assessment process) to better describe and understand the functioning of the ecosystems, that form the coastal interface, and in particular the filter effect is exerted on nutrients in response to the environmental pressures, both anthropogenic and non-anthropogenic - the climate change, land use/cover change, urbanization and effluent treatment from both point and non-point sources. For this it is necessary a broad analytical framework (rather than a specific model) in which to set a more detailed analysis.