Proß S. Hybrid modeling and optimization of biological processes. Bielefeld: Bielefeld University; 2013

Proß, Sabrina

English

Publications at Bielefeld University

(2011a) An Advanced Environment for Hybrid Modeling and Parameter Identification of Biological Systems.

A hybrid approach to modeling metabolic systems using a genetic algorithm and simplex method.

A Petri net application to model metabolic processes. Systems Analysis Modelling Simulation 16(2):113–122 Hofestädt R, Thelen S

Alcon A

An integrative bioinformatics solution to visualize and examine biological networks. Master Thesis, Bielefeld University Jensen K

Analysis of signalling pathways using continuous time Markov chains.

Automatic sensitivity analysis of kinetic mechanisms.

Biological reaction engineering: dynamic modelling fundamentals with simulation examples.

Cell Illustrator 4.0: A computational platform for systems biology.

Collective phenomena in evolutionary systems.

Continuous and hybrid Petri nets,

Convergence properties of the Nelder-Mead simplex method in low dimensions.

Dymola-Dynamic Modeling Laboratory-User Manual Volume 2,

Effect of growth conditions on the production, composition and viscosity of Xanthomonas campestris exopolysaccharide. Microbiology 132(6):1483-1492 Tarjan R

Evaluating the CMA evolution strategy on multimodal test functions.

Evolution strategies–A comprehensive introduction. Natural computing 1(1):3–52 Brinkrolf C

Evolutionary algorithms in theory and practice: evolution strategies, evolutionary programming, genetic algorithms.

Evolutionsstrategie: Optimierung technischer Systeme nach Prinzipien der biologischen Evolution.

Extended BNF-a generic base standard. Software Engineering Standards Symposium Sessego F, Giua A, Seatzu C

Extensions to the Petri Net Library in Modelica. ETH Zurich, Switzerland Finkel D

Extracellular microbial polysaccharides. I. Substrate, biomass, and product kinetic equations for batch xanthan gum fermentation. Biotechnology and Bioengineering 22(4):859–873 Weyl H

Kinetics of Secondary Metabolite Synthesis in Batch Culture When Two Different Substrates Limit Cell Growth and Metabolite Production: Xanthan Synthesis by Xanthomonas campestrisa.

Kommunikation mit Automaten. Dissertation, Rheinisch-Westfälisches Institut für Instrumentelle Mathematik, Bonn Petri Net World (2012) http://www.informatik.uni-hamburg.de/TGI/PetriNets/ (called 7.8.2012) Petzold LR

Mass transfer coefficient in stirred tank reactors for xanthan gum solutions. Biochemical engineering journal 1(1):1–10 García-Ochoa F, Santos V, Alcon A

Modelica - A Unified Object-Oriented Language for Physical Systems Modeling Language Specification Version 3.2 Modelica Association (2011) www.modelica.org (called 7.8.2012) Moles CG, Mendes P,

Nonlinear parameter estimation.

Optimale lineare Modelle für das dynamische Verhalten mechanischer Systeme mit endlicher Anzahl von Freiheitsgraden.

Optimization by Direct Search: New Perspectives on Some Classical and Modern Methods.

Parallel Problem Solving from Nature-PPSN VIII.

Principal component analysis of kinetic models. International journal of chemical kinetics 17(1):55–81 Valk R

Rheological models for xanthan gum.

Rheological properties of selected hydrocolloids as a function of concentration and temperature.

Sensitivity analysis in practice: a guide to assessing scientific models.

SimHPN: A MATLAB toolbox for simulation, analysis and design with hybrid Petri nets. Nonlinear Analysis: Hybrid Systems

Smoothing by spline functions.

Snoopy—a unifying Petri net framework to investigate biomolecular networks.

Symbolic Calculation of partial derivatives for linearization of non-linear Modelica models in OpenModelica. OpenModelica Annual Workshop Olsson

The CMA evolution strategy: a comparing review. Towards a new evolutionary

Hybrid modeling and optimization of biological processes

http://pub.uni-bielefeld.de/publication/2562185

Hybrid modeling and optimization of biological processes

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