Bamfiles ChIP-seq

Abstract

Bamfiles resulting from mapping reads deposited in GEO (Accession GSE121283) to the genome of Fusarium oxysporum f. sp. lycopersici 4287 (Fol4287). Adapter sequences were removed and quality scores were converted to Sanger format with the MAQ sol2sanger command if needed. Quality was checked manually using FastQC. Reads were aligned to the genome of Fol4287 using `bwa aln` (bwa version 0.7.12) Duplicate reads were removed with `Picard tools` (version 1.134) (http://broadinstitute.github.io/picard, MarkDuplicates) See 10.1016/j.fgb.2015.03.006 for details on ChIP-seq experiment protocols. This dataset is described in 10.1101/465070

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    Last time updated on 09/07/2019