B Virk

C Portal-Celhay

Catherine F Clarke

GM Martin

JM Green

LX Xie

M Dietrich

OG Patel

R Nass

R Saiki

T Yatsunenko

Theresa PT Nguyen

BMC Biology

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Aging in Caenorhabditis elegans - nature versus nuture (or a diet of E. coli)?The first genes extending lifespan were identified in the nematode Caenorhabditis elegans [1], and several of the metabolic pathways they are involved in are conserved in other species, including flies, mice and humans. Some of the pioneering studies on aging in C. elegans made use of RNA interference (RNAi) to manipulate gene expression, a strategy that is easily applied in C.  elegans by feeding the worms on Escherichia coli strains expressing the relevant RNA sequence.However, it is becoming increasingly clear that the E. coli diet itself can have profound affects on C. elegans lifespan, and the degree of bacterial colonization within the worm gut has been shown to correlate inversely with worm lifespan [2]. In a recent paper in BMC Biology, Virk et al. [3] capitalize on a serendipitous finding - they show that a C. elegans lifespan extension phenotype originally attributed to an RNAi clone targeting the ugt-27 gene is actually due to a spontaneous mutation present in the host E. coli strain. The authors then use classic nutritional selection experiments and identify the mutation as an IS1 insertion element within the E. coli aroD gene. AroD is a dehydratase required for the production of shikimate (SHK; Figure 1), which is in turn a precursor of choris-mate, a precursor of a wide variety of aromatic com-pounds in E.  coli. Thus, the aroD mutation affects pro-duc tion of Phe, Tyr, and Trp (essential aromatic amino acids), menaquinol (vitamin K2), enterobactin (involved in E.  coli iron uptake), coenzyme Q (an essential lipid component of the respiratory chain) and folates (vitamin B9). Virk et al. convincingly demonstrate that the lifespan extension in C. elegans can be returned to normal when the diet of E. coli aroD- is supplemented with either SHK or the folate precursor, pABA (Figure 1), but not when it is supplemented with the other aromatic products of this pathway. Because pABA supplementation abrogates the lifespan extension of C. elegans fed the aroD- E. coli diet, Virk et al. focus their attention on folate metabolism.pABA and sulfa drugs - do they impact more than just folate metabolism?In E.  coli and other microbes, pABA is a precursor of dihydrofolate (DHF; Figure  2). Folates play crucial roles in metabolism of amino acids, purines and pyrimidines. Reduction of DHF produces the active form of the vitamin, tetrahydrofolate (THF), which in turn is a versa-tile one-carbon carrier that functions to donate and accept one carbon units at differing states of oxidation, including 5-methyl-THF, 5,10-methylene THF, 5,10-methenyl-THF, and formyl-THF. These folate coenzymes play essential roles in the synthesis of nucleic acids and amino acid metabolism. Because folates also contain variable numbers of glutamate residues, cells contain a truly bewildering array of mono- and poly-glutamated folate derivatives. Formyl-THF-Glu3 is the most abundant species in E. coli, and the authors show its content is severely decreased in the E.  coli aroD mutant. Furthermore, they show that sulfa methoxazole (SMX), a sulfa-drug antibiotic and well-known pABA mimic, elicits a dose-dependent life-span extension when added to C. elegans growth medium containing the standard laboratory E. coli OP50 diet. The AbstractIn a paper in BMC Biology Virk et al. show that Caenorhabditis elegans lifespan is extended in response to a diet of folate-deficient Escherichia coli. The deficiencies in folate biosynthesis were due to an aroD mutation, or treatment of E. coli with sulfa drugs, which are mimics of the folate precursor para-aminobenzoic acid. This study suggests that pharmacological manipulation of the gut microbiome folate status may be a viable approach to slow animal aging, and raises questions about folate supplementation.Folate status of gut microbiome affects Caenorhabditis elegans lifespanTheresa PT Nguyen and Catherine F Clarke*See research article: www.biomedcentral.com/1741-7007/10/67co m m e n tA ry  open Access*Correspondence: cathy@chem.ucla.edu UCLA Department of Chemistry and Biochemistry and the Molecular Biology Institute, 607 Charles E Young Dr E, Los Angeles, CA 90095 USA© 2012 Nguyen and Clarke; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.Nguyen and Clarke BMC Biology 2012, 10:66 http://www.biomedcentral.com/1741-7007/10/66authors show that formyl-THF-Glu3 content is also dramatically decreased in SMX-treated OP50 E. coli, and in C. elegans fed the SMX-treated OP50 E. coli diet.The results show that inhibition of folate synthesis in the microbe extends C.  elegans lifespan. Is a decreased supply of folate per se mediating lifespan extension? Virk et al. tested whether the direct addition of folate to the aroD E.  coli diet reversed C.  elegans lifespan extension. At the outset, this seemed like a straightforward experi-ment: E. coli (and other microbes) do not assimilate exo-genous folates (this is why the sulfa drugs are so effective). However, the results obtained showed intermediate effects. Folate supplementation only partially reversed the lifespan extension. In fact, the authors showed that this folate supplementation experiment is not so simple. When the E. coli aroD mutant was grown in the presence of exogenous folate the formyl-THF-Glu3 content of the bacteria increased! While microbial folate catabolism pathways are not completely understood, it is clear that E. coli has a transporter that allows for uptake of pABA-glutamate, a folate breakdown product (Figure 2), and a hydrolase that can process pABA-glu into free pABA and Figure 1. E. coli aroD mutants have defects in shikimate biosynthesis and fail to produce diverse aromatic metabolites. An abbreviated sequence of reactions involved in the E. coli biosynthesis of shikimate (SHK) and chorismate, and the products of this metabolism, are indicated. Black solid arrows indicate one step; black dashed arrows indicate multi-step pathways (four gene products catalyzing three steps convert SHK to chorismate). Chorismate is a precursor in the synthesis of aromatic amino acids (Phe, Tyr, Trp), menaquinol (used in E. coli respiratory electron transport and a precursor of vitamin K), enterobactin (a siderophore used by E. coli to acquire iron), 4-hydroxybenzoic acid (4-HB; a precursor of coenzyme Q) and para-aminobenzoic acid (pABA; a precursor of folate). Addition of either SHK or pABA reversed the lifespan extension in C. elegans fed a diet of aroD mutant E. coli (green boxes). In contrast, addition of the aromatic amino acids or 4-HB failed to reverse the lifespan extension (red dashed boxes). pABA also serves as a precursor of coenzyme Q in the yeast Saccharomyces cerevisiae [6]. However, it is not yet know whether pABA is an aromatic ring precursor in coenzyme Q biosynthesis in E. coli (red dashed arrow with question marks). Sulfa drugs mimic pABA and hence inhibit folate biosynthesis in microbes, but the effect on coenzyme Q has yet to be determined.In E. coli ?    Sulfa Drugs (pABA mimics) ???!HCH3MeOCH3MeOOHOHOHCOO-  4-HBCoenzyme QH2n(UbiA-UbiH)(IspB, UbiX)OHHOCOO-OHCOO-shikimate   (SHK)UbiCpABAchorismateOHCCH2O COO-PhenylalanineTyrosineTryptophanMenaquinolEnterobactinOHOCOO-3-dehydro- shikimateOHAroDPEP  +  Erythrose-4-PhosphateOHOCOO-OHHO3-dehydro-   quinateAroENH2COO-PabABCFOLATES(UbiA-UbiH)(IspB, UbiX)r  Nguyen and Clarke BMC Biology 2012, 10:66 http://www.biomedcentral.com/1741-7007/10/66Page 2 of 4glutamate [4]. Hence, the catabolism of exogenously added folate by E.  coli (and by the gut microbiome) leads to de novo synthesis of more folate. Finally, the extent to which C. elegans takes up exogenously added folate was not determined, although this may have important implications for whether folate supple men-tation is an effective way to boost folate stores in C. elegans.Figure 2. Sulfa drugs strike more than once in the folate biosynthetic pathway. Dihydropteroate synthase catalyzes the condensation of dihydropterin pyrophosphate and pABA to form dihydropteroate. Glutamate chain length depends on the cellular role of the folate derivative, and the nal tetrahydrofolate product may have from one to six Glu residues. As indicated by the red lines, sulfa drugs (such as sulfamethoxazole, SMX) block folate production at the dihydropteroate synthase step by competing with pABA, and by acting as a substrate itself. The resulting sulfa-DHP derivative is an additional folate biosynthesis inhibitor, competing against dihydrofolate (DHF) for reduction by dihydrofolate reductase. E. coli are capable of transporting and hydrolyzing pABA-glu (a folate breakdown product) to produce free pABA and glutamate for de novo folate synthesis [4].Dihydropteroate synthase Dihydropteridine pyrophosphate (SMX) Sulfa drugs pABA Dihydropteroate L-glutamate + ATP Dihydrofolate synthase ADP + Pi NADPH + H+ Dihydrofolate reductase NADP+ Sulfa-dihydropteroate Tetrahydrofolate (THF) (DHF) Dihydrofolate pABA pABA + Glu OOHHNCONHNOHNH2N N NHOO-Nguyen and Clarke BMC Biology 2012, 10:66 http://www.biomedcentral.com/1741-7007/10/66Page 3 of 4So the jury is still out - clearly the microbe’s folate status affects C. elegans lifespan. But whether this is due to the content of folate in the diet, or to indirect effects of the folate status on E.  coli or C.  elegans is still an open question. It would be interesting to test folate supple-men tation with axenic medium, where E.  coli is elimi-nated from the C.  elegans diet and the folate content could be precisely defined [5]. It would also be important to determine whether the enhanced lifespan of C. elegans fed either the E. coli aroD mutant, or OP50 treated with SMX, is related to the extent of bacterial colonization of the worm intestine [3].It is intriguing to consider other possible fates of pABA in this model, as addition of pABA did completely reverse the lifespan extension in C. elegans fed the aroD- diet. In the yeast Saccharomyces cerevisiae, pABA serves as an alternative aromatic ring precursor in the biosynthesis of coenzyme Q [6]. The fate of pABA as a ring precursor of coenzyme Q in E.  coli or C.  elegans is still uncertain. Hence, it would be of interest to monitor the effect of 4-HB or pABA supplementation on the coenzyme Q content in E. coli aroD mutants. Virk et al. showed that addition of 4-HB, an established ring precursor of co-enzyme Q in E.  coli, did not reverse the lifespan exten-sion. Nonetheless, since C. elegans fed respiratory defec-tive mutant strains of E.  coli diet show an extended lifespan [7], the possible impact of SMX and pABA on coenzyme Q content and respiratory metabolism in E. coli remains an intriguing avenue of future investi gation.Not only do sulfa drugs directly inhibit folate biosynthesis through competition of SMX with pABA at the dihydropteroate synthase step, but they also produce sulfa-dihydropteroate in the process, and this in turn acts as an inhibitor of dihydrofolate reductase (DHFR), the final step in the production of THF [8]. Although sulfa-dihydropteroate is excreted by E.  coli, it is likely to be present in the worm gut. This raises the question of whether other drugs (such as methotrexate, an inhibitor of dihydrofolate reductase and widely used in chemo-therapy) might also impart lifespan extension effects when added to the worm diet.Folate supplementation, sulfa drugs, and human agingLike C. elegans, mammals are unable to synthesize folate and acquire the metabolite through diet and gut micro-flora production. Since 1998, the US Food and Drug Administration has required folate supplementation in all cereal grains, which has resulted in higher blood folate content of the adult, non-supplement using population [9]. Recently, a study on the gut microflora of 531 human subjects across a wide range of ages, ethnicities, and geography showed that microbes residing in babies are enriched in genes involved in de novo folate biosynthesis, whereas the microbes residing in adult subjects were enriched in genes that metabolize dietary folate and THF [10]. However, because folate supplementation regula-tions and diet differ in the sampling population, there is insufficient data to assess whether the changes in micro-bial folate biosynthesis gene expression are linked to dietary folate. Interestingly, Virk et al. note that sulfa drugs have been reported to inhibit microbiome folate synthesis and extend lifespan in rats [1]. While the mechanism remains to be determined regarding how genetic or pharmacological knockdown of folate in E. coli can enhance C.  elegans lifespan, Virk et al. have raised the intriguing possibility that manipulation of the folate status of gut microflora may impact lifespan in other species.AcknowledgementsThis work was supported by the National Science Foundation Grant 0919609 (to CFC).Published: 31 July 2012References1.  Martin GM: the biology of aging: 1985-2010 and beyond. FASEB J 2011, 25:3756-3762.2.  Portal-Celhay C, Bradley ER, Blaser MJ: control of intestinal bacterial proliferation in regulation of lifespan in Caenorhabditis elegans. BMC Microbiol 2012, 12:49.3.  Virk B, Correia G, Dixon DP, Feyst I, Jia J, Oberleitner N, Briggs Z, Hodge E, Edwards R, Ward J, Gems D, Weinkove D: excessive folate synthesis limits lifespan in the C. elegans: E. coli aging model. BMC Biol 2012, 10: 67 4.  Green JM, Hollandsworth R, Pitstick L, Carter EL: Purification and characterization of the folate catabolic enzyme p-aminobenzoyl-glutamate hydrolase from Escherichia coli. J Bacteriol 2010, 192:2407-2413.5.  Nass R, Hamza I: the nematode C. elegans as an animal model to explore toxicology in vivo: solid and axenic growth culture conditions and compound exposure parameters. Curr Protoc Toxicol 2007, chapter 1:Unit1 9.6.  Xie LX, Ozeir M, Tang JY, Chen JY, Jaquinod SK, Fontecave M, Clarke CF, Pierrel F:overexpression of the coq8 kinase in Saccharomyces cerevisiae coq null mutants allows for accumulation of diagnostic intermediates of the coenzyme Q6 biosynthetic pathway. J Biol Chem 2012, 287:23571-23581.7.  Saiki R, Lunceford AL, Bixler T, Dang P, Lee W, Furukawa S, Larsen PL, Clarke CF: Altered bacterial metabolism, not coenzyme Q content, is responsible for the lifespan extension in Caenorhabditis elegans fed an Escherichia coli diet lacking coenzyme Q. Aging Cell 2008, 7:291-304.8.  Patel OG, Mberu EK, Nzila AM, Macreadie IG: Sulfa drugs strike more than once. Trends Parasitol 2004, 20:1-3.9.  Dietrich M, Brown CJ, Block G: the effect of folate fortification of cereal-grain products on blood folate status, dietary folate intake, and dietary folate sources among adult non-supplement users in the United States. J Am Coll Nutr 2005, 24:266-274.10.  Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, Lozupone CA, Lauber C, Clemente JC, Knights D, Knight R, Gordon JI: Human gut microbiome viewed across age and geography. Nature 2012, 486:222-227.doi:10.1186/1741-7007-10-66Cite this article as: Nguyen TPT, Clarke CF: Folate status of gut microbiome affects Caenorhabditis elegans lifespan. BMC Biology 2012, 10:66.Nguyen and Clarke BMC Biology 2012, 10:66 http://www.biomedcentral.com/1741-7007/10/66Page 4 of 4

Folate status of gut microbiome affects Caenorhabditis eleganslifespan

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Folate status of gut microbiome affects Caenorhabditis eleganslifespan

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