IMP test data set

Abstract

<p>This file contains the test data set used within the article:</p> <p><strong>IMP: a reproducible pipeline for reference-independent integrated metagenomic and metatranscriptomic analyses</strong></p> <p>Shaman Narayanasamy^†, Yohan Jarosz^†, Emilie E.L. Muller, Cédric C. Laczny, Malte Herold, Anne Kaysen, Anna Heintz-Buschart, Nicolás Pinel, Patrick May, and Paul Wilmes^*</p> <p>Preprint: http://biorxiv.org/content/early/2016/02/10/039263</p> <p>This test data set was used for benchmarking the run times of IMP. They are derived by selecting the first 5% of reads from a wastewater sludge microbial community dataset (see manuscript). Also included are the respective preprocessed FASTQ files such that IMP can be tested without running the preprocessing step. A README file inside the folder briefly describes the different FASTQ files contained in the folder.</p