This dataset contains the genotypic and phenotypic information used in the whole-genomic statistical models for Coffea canephora. In the original manuscript, two populations of recurrent selection were genotyped and three traits - coffee bean production, incidence of rust and yield of green beans - were evaluated in two locations. Genotypic data (SNPs identified using the Genotyping-by-Sequencing approach) for both populations are stored in two .csv files (-1,0,1 format). Phenotype data for both populations are also stored in two .csv files. The values stored in the phenotypic files are phenotypes adjusted for linear effects of environmental covariates and other experimental covariates
