Assemblies for nine A. altilis, seven A. camansi, one A. mariannensis, and seven A. altilis × A. mariannensis hybrid samples. Raw reads were trimmed using Trimmomatic v0.30 to remove low quality bases, adapter sequences, and other sequencing artifacts. Poly-A and poly-T tails were removed with Trimest vEMBOSS:6.6.0.0. Trimmed paired and unpaired reads were assembled using Trinity vr2013-02-25 and only the longest isoform per component/subcomponent was retained