Additional file 2: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

Abstract

Figure S1. Gene coverage uniformity plots for each tissue type for a) all genes, b) 500 highest expressed genes and c) 500 lowest expressed genes, as determined by Qualimap 2 [1]. Figure S2. Splicing junction saturation analysis for each tissue type for a) all splicing junctions, b) known splicing junctions and c) novel splicing junctions. Figure S3. The distribution of concordance between imputed and RNA sequence genotypes. Figure S4. Sample principal components clustering based on exon expression. Figure S5. Correlation of sQTLs (splicing quantitative trait loci), eeQTLs (exon expression QTLs) and geQTLs (gene expression QTLs) effects (t values) between tissues. Figure S6. Sharing of sQTLs (splicing quantitative trait loci), eeQTLs (exon expression QTLs) and geQTLs (gene expression QTLs) in paired tissues at p < 0.05 level. Figure S7. Manhattan plot of eeQTLs for the MGST1 gene. (PDF 737 kb