Figure S1. Heatmap of differentially expressing genes. Figure S2. Verification of RNA-seq by qRT-PCT. Figure S3. Top 30 significantly enriched pathways based on up-expressed genes in ‘Kiyomi’ compared with in ‘Shiranui’ at the first-stage. Figure S4. Top 30 significantly enriched pathways based on up-expressed genes in ‘Shiranui’ compared with in ‘Kiyomi’ at the first-stage. Figure S5. Top 30 significantly enriched pathways based on up-expressed genes in ‘Kiyomi’ compared with in ‘Shiranui’ at the second-stage. Figure S6. Top 30 significantly enriched pathways based on up-expressed genes in ‘Shiranui’ compared with in ‘Kiyomi’ at the second-stage. Table S1. Primers used in quantitative qRT-PCR experiments. Table S2. Top 30 significantly enriched pathways based on up-regulated genes. Table S3. Genes involved in pectin metabolism. Table S4. Genes involved in cellulose metabolism. Table S5. Genes involved in hemicellulose (xyloglucans and xylan) metabolism. (PDF 808 kb