HST -values are below the diagonal; TRANSMIT -values are above; estimated minor allele frequencies are on the left margin

Abstract

<p><b>Copyright information:</b></p><p>Taken from "Identification of polymorphisms explaining a linkage signal: application to the GAW14 simulated data"</p><p></p><p>BMC Genetics 2005;6(Suppl 1):S88-S88.</p><p>Published online 30 Dec 2005</p><p>PMCID:PMC1866692.</p><p></p> The square identified by "i" represents the imost significant (by both HST and TRANSMIT) SNP pair ranked by the sum of the TRANSMIT and HST -values. For example, in the top panel, "3" (in the first row) means that HST and TRANSMIT -values for pair B8321–B8341 are both significant and the sum of their -values is the third most significant. Hj and Tj represent the jsignificant SNP pair by HST and TRANSMIT, respectively. Note, on the top panel, "2"-H2, "3"-H3 coincide; only "2" and "3" are identified. Similarly for the bottom panel, "4"-T5, "6"-H4 coincide and only "4" and "6" are identified

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