Additional file 2: of Finding RNA structure in the unstructured RBPome

Abstract

Figure S2 A) RNA structural binding preferences do not improve in vitro binding prediction when random structure probabilities are assigned. Correlation results over 488 paired experiments reveals that RNA structure does not improve binding prediction when structure probabilities are assigned randomly. B) RNA structural binding preferences do not improve in vivo binding prediction when random structure probabilities are assigned. AUC results of 96 paired eCLIP and RNAcompete experiments over 21 joint proteins demonstrate that RNA structural binding preferences learned from in vitro data do not correlate well with protein-RNA interactions measured in vivo when structure probabilities are assigned randomly. (PNG 85 kb