Deletion_Calls

Abstract

Spreadsheet containing genomic deletion calls for all deletion alleles. Columns include: include accession and chromosomal location information, estimated deletion size (size), count of supporting illumina reads (num_reads), deletion allele includes ref. genome (contains_IM62), sequence read coverage in deleted interval (cov), "N" bases in deleted interval in ref. genome (prop_Ns). Annotation of gene and Transposable element hits (gene_hits and TE_hits; includes annoation and proportion deleted in parenthesis)

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